Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023294.1 Corchorus olitorius cultivar O-4 contig23327, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5226
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30


Found at i:780 original size:16 final size:15

Alignment explanation


    Indices: 742--784  Score: 68
    Period size: 15  Copynumber: 2.8  Consensus size: 15

        732 ACAGAGGTTG

                           
        742 ACAGAAAACAAATAA
          1 ACAGAAAACAAATAA

                       *   
        757 ACAGAAAACAATTAA
          1 ACAGAAAACAAATAA

                         
        772 ACTAGAAAACAAA
          1 AC-AGAAAACAAA

        785 ACAAAGTAAA


Statistics
Matches: 25,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  15   16  0.64
  16    9  0.36

ACGTcount: A:0.70, C:0.14, G:0.07, T:0.09


Consensus pattern (15 bp):   
ACAGAAAACAAATAA
Done.