Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023298.1 Corchorus olitorius cultivar O-4 contig23331, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34666

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
218--257
2
20.0
2
100
0
80
50
0
0
50
1.00
1954--1983
13
2.3
13
94
0
51
63
0
0
36
0.95
7881--7909
2
14.5
2
100
0
58
51
0
0
48
1.00
11913--11992
26
3.1
26
94
0
133
51
7
12
28
1.67
20414--20535
64
1.9
64
100
0
244
35
8
18
37
1.81
26292--26385
45
2.2
43
88
7
138
39
22
4
34
1.74
29222--29314
41
2.3
41
94
0
159
36
0
17
46
1.48
29245--29310
15
4.6
15
70
22
52
33
0
18
48
1.48
30815--30887
15
5.1
15
68
24
50
34
0
15
50
1.44
30812--30887
16
5.2
16
67
22
51
34
0
14
51
1.43
30803--30884
41
2.0
41
90
0
128
36
0
14
48
1.44
33152--33230
41
1.9
41
94
5
142
27
12
16
43
1.84
33229--33265
13
2.8
13
87
0
56
32
8
43
16
1.77
34248--34277
3
10.0
3
92
0
51
63
3
0
33
1.11
34568--34609
14
2.9
15
82
7
59
50
0
7
42
1.30

Tables:   1

The End!