Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023299.1 Corchorus olitorius cultivar O-4 contig23332, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37311

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--36
2
18.0
2
100
0
72
50
0
0
50
1.00
1590--1630
2
22.0
2
85
14
61
51
0
0
48
1.00
1589--1629
9
4.1
11
84
15
54
53
0
0
46
1.00
1589--1630
15
2.9
15
96
3
77
52
0
0
47
1.00
1589--1642
15
3.8
14
83
11
65
51
1
1
44
1.22
1590--1630
13
3.3
13
86
13
59
51
0
0
48
1.00
1590--1630
17
2.6
17
88
11
61
51
0
0
48
1.00
1710--1793
44
1.9
44
92
0
141
40
22
9
27
1.85
2367--2504
69
2.0
69
91
2
224
47
12
13
26
1.78
4105--4145
15
2.7
15
82
17
50
12
34
4
48
1.62
8983--9026
21
2.1
21
100
0
88
18
25
18
38
1.92
10239--10305
21
3.2
21
64
16
57
50
14
5
28
1.66
10226--10306
42
1.9
42
97
0
153
46
16
7
29
1.73
10374--10485
57
2.0
57
94
1
199
40
2
23
33
1.69
17018--17053
18
2.0
18
89
10
56
22
11
5
61
1.50
19521--19565
18
2.4
18
89
10
65
62
4
2
31
1.27
21005--21075
29
2.4
29
100
0
142
23
9
23
42
1.84
23622--23663
22
1.9
22
85
0
57
42
21
16
19
1.89
24864--25125
129
2.0
129
87
5
377
50
1
10
37
1.48
31359--31385
10
2.7
10
100
0
54
77
7
0
14
0.97

Tables:   1

The End!