Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023306.1 Corchorus olitorius cultivar O-4 contig23339, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21484

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1882--1911
15
2.0
15
93
0
51
43
10
33
13
1.77
6076--6185
57
1.9
57
96
0
202
30
20
15
33
1.93
7053--7129
26
3.2
26
62
24
67
32
12
20
33
1.91
7042--7137
47
2.0
47
97
0
183
32
14
18
34
1.91
7341--7380
21
1.9
21
94
0
71
20
10
12
57
1.63
7755--7836
23
3.6
23
85
3
103
37
15
7
39
1.76
7491--8025
22
24.7
21
67
14
146
34
15
10
39
1.81
7753--7917
83
2.0
83
83
7
210
34
16
7
41
1.76
8129--8358
22
10.5
22
71
10
166
33
14
10
41
1.79
8395--8520
22
5.7
22
72
12
98
35
17
9
37
1.82
8539--8646
22
4.8
22
71
13
69
44
17
6
31
1.74
8691--8748
22
2.6
22
81
5
73
39
17
6
36
1.76
9425--10334
440
2.1
431
79
6
931
42
14
13
30
1.84
10818--10846
14
2.0
15
93
6
51
48
0
0
51
1.00
11651--11737
22
4.0
22
82
4
97
43
14
4
36
1.67
14270--14330
27
2.2
28
80
13
74
47
1
4
45
1.34
14631--14846
108
2.0
109
93
0
371
44
14
9
30
1.78
19606--19665
22
2.8
22
87
2
77
40
8
8
43
1.65

Tables:   1

The End!