Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002331.1 Corchorus olitorius cultivar O-4 contig02331, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 662

Length: 1104
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31


Found at i:117 original size:21 final size:21

Alignment explanation


    Indices: 58--108  Score: 93
    Period size: 21  Copynumber: 2.4  Consensus size: 21

         48 ATAAACCCTA

                                 
         58 GTACCACTTAGATCCAATTTT
          1 GTACCACTTAGATCCAATTTT

                                 
         79 GTACCACTTAGATCCAATTTT
          1 GTACCACTTAGATCCAATTTT

               *     
        100 GTATCACTT
          1 GTACCACTT

        109 GTCTCCAATA


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  21   29  1.00

ACGTcount: A:0.27, C:0.24, G:0.10, T:0.39


Consensus pattern (21 bp):   
GTACCACTTAGATCCAATTTT
Done.