Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023310.1 Corchorus olitorius cultivar O-4 contig23343, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2791
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:832 original size:12 final size:11

Alignment explanation


    Indices: 815--853  Score: 51
    Period size: 12  Copynumber: 3.4  Consensus size: 11

        805 CCTACAAAGA

                        
        815 AAAAGAAAAATT
          1 AAAAG-AAAATT

                     * 
        827 AAAAGAAAACT
          1 AAAAGAAAATT

                        
        838 AGAAAGAAAATT
          1 A-AAAGAAAATT

                
        850 AAAA
          1 AAAA

        854 TGTTAGTAAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  11    9  0.38
  12   15  0.62

ACGTcount: A:0.74, C:0.03, G:0.10, T:0.13


Consensus pattern (11 bp):   
AAAAGAAAATT

Found at i:2748 original size:15 final size:15

Alignment explanation


    Indices: 2718--2759  Score: 66
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       2708 TTACTCTGCT

                            
       2718 TTGTTTTCTAGTTTAA
          1 TTGTTTTCT-GTTTAA

                           
       2734 TTGTTTTCTGTTTAA
          1 TTGTTTTCTGTTTAA

               *       
       2749 TTGCTTTCTGT
          1 TTGTTTTCTGT

       2760 CAATCTATGT


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15   16  0.64
  16    9  0.36

ACGTcount: A:0.12, C:0.10, G:0.14, T:0.64


Consensus pattern (15 bp):   
TTGTTTTCTGTTTAA
Done.