Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023312.1 Corchorus olitorius cultivar O-4 contig23345, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41166

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2627--2672
24
1.9
24
95
0
83
34
17
21
26
1.95
5272--5319
3
16.0
3
100
0
96
66
0
0
33
0.92
5904--5984
32
2.5
32
91
0
135
28
7
32
32
1.85
7161--7205
18
2.5
20
72
20
53
46
2
2
48
1.26
12327--12578
107
2.4
105
89
3
373
40
9
7
42
1.66
25963--26009
17
3.1
17
71
28
59
36
40
12
10
1.78
26797--26821
11
2.3
11
100
0
50
80
0
12
8
0.92
29052--29127
35
2.2
35
95
0
134
25
17
17
40
1.90
29153--29284
17
7.8
17
68
23
66
51
0
0
46
1.11
29323--29357
18
1.9
18
94
0
61
28
8
11
51
1.67
29451--29549
41
2.7
35
78
19
119
43
25
15
16
1.86
29484--29553
20
3.5
20
64
3
59
48
25
12
12
1.77
29470--29568
41
2.4
41
98
0
189
41
27
19
12
1.86
30566--30599
8
4.2
8
96
0
59
52
0
0
47
1.00
30566--30612
16
3.0
16
87
9
62
51
0
0
48
1.00
31379--31422
22
2.0
22
90
0
70
45
4
0
50
1.22
31384--31430
2
24.5
2
78
8
53
46
2
0
51
1.13
38674--38720
3
16.0
3
95
4
87
31
0
0
68
0.90
41076--41113
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!