Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023313.1 Corchorus olitorius cultivar O-4 contig23346, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35925

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1040--1183
49
2.9
49
86
5
182
30
10
10
48
1.71
3988--4026
20
1.9
21
89
5
62
5
17
0
76
0.96
6235--6492
136
1.9
139
85
8
366
47
1
10
39
1.50
6772--6796
2
12.5
2
100
0
50
52
0
0
48
1.00
6984--7093
56
1.9
57
92
1
186
35
22
1
40
1.65
7391--7444
27
2.0
27
88
0
81
46
3
12
37
1.60
7788--7813
12
2.2
12
100
0
52
53
7
15
23
1.67
9847--9901
13
4.3
13
80
15
53
36
18
1
43
1.61
9861--9907
6
7.7
6
80
20
53
36
17
0
46
1.48
11656--11697
22
1.9
22
85
0
57
14
16
26
42
1.86
18142--18172
16
1.9
16
93
0
53
64
16
3
16
1.42
22951--22980
12
2.5
12
100
0
60
23
0
0
76
0.78
23054--23083
16
1.9
15
93
6
51
60
6
6
26
1.47
23459--23500
22
1.9
22
90
0
66
50
4
14
30
1.63
29679--29754
2
39.5
2
75
17
72
46
1
2
50
1.24
29679--29762
9
9.2
9
71
20
59
47
1
2
48
1.22
29679--29766
29
3.0
29
78
15
101
46
1
2
50
1.21
29679--29754
25
2.8
27
80
11
93
46
1
2
50
1.24
31236--31290
25
2.1
27
90
6
87
27
12
7
52
1.65
35288--35339
15
3.2
17
73
26
51
38
3
0
57
1.17
35288--35374
18
5.1
17
70
19
56
41
3
1
54
1.25
35316--35345
15
1.9
16
93
6
53
33
6
0
60
1.23

Tables:   1

The End!