Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023315.1 Corchorus olitorius cultivar O-4 contig23348, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47668

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
859--913
29
1.9
28
92
3
92
45
12
23
18
1.83
4956--5035
30
2.7
31
79
11
87
15
22
20
42
1.88
5397--5441
22
2.0
22
86
0
63
0
22
48
28
1.50
5414--5520
16
6.7
16
74
14
96
7
17
38
36
1.78
5414--5520
32
3.3
32
90
2
162
7
17
38
36
1.78
5517--5560
23
1.9
23
85
0
61
4
20
47
27
1.69
5534--5566
17
1.9
17
93
0
57
9
24
42
24
1.83
5689--5740
12
4.3
12
75
15
54
57
1
0
40
1.10
10912--10944
6
5.8
6
86
13
52
84
0
15
0
0.61
10912--10942
16
1.9
16
100
0
62
83
0
16
0
0.64
10912--10944
10
2.9
12
82
17
52
84
0
15
0
0.61
11605--11691
33
2.6
33
83
7
106
6
33
41
18
1.77
11953--12008
29
2.0
28
89
3
85
28
8
21
41
1.83
13265--13330
34
2.0
34
96
3
125
21
15
10
53
1.72
17218--17292
25
3.2
25
70
18
79
74
2
9
13
1.16
17218--17303
45
1.9
45
97
0
163
74
2
11
11
1.17
18044--18100
30
2.0
30
93
6
100
45
7
5
42
1.53
21105--21143
20
2.0
19
85
14
53
30
15
25
28
1.96
26717--26741
7
3.6
7
100
0
50
76
0
24
0
0.80
37686--37870
93
2.0
93
93
0
316
32
14
1
51
1.52
39455--39698
85
2.9
86
88
2
359
35
9
3
51
1.51
44525--44575
17
3.0
17
76
18
61
29
13
13
43
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44914--44969
25
2.3
24
84
3
76
30
14
12
42
1.82

Tables:   1

The End!