Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023317.1 Corchorus olitorius cultivar O-4 contig23350, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2959
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34


Found at i:382 original size:15 final size:16

Alignment explanation


    Indices: 349--388  Score: 55
    Period size: 15  Copynumber: 2.6  Consensus size: 16

        339 TTTGTTTGTT

                            
        349 TTGTTTTCTAGTATAA
          1 TTGTTTTCTAGTATAA

                        *   
        365 TTGTTTTCT-GTTTAA
          1 TTGTTTTCTAGTATAA

               *     
        380 TTGCTTTCT
          1 TTGTTTTCT

        389 TTCAACTTCT


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15   13  0.59
  16    9  0.41

ACGTcount: A:0.15, C:0.10, G:0.12, T:0.62


Consensus pattern (16 bp):   
TTGTTTTCTAGTATAA

Found at i:2269 original size:17 final size:16

Alignment explanation


    Indices: 2244--2277  Score: 50
    Period size: 17  Copynumber: 2.1  Consensus size: 16

       2234 GATCAAGTGT

                *            
       2244 AGAAGTAAAAAGGAAAA
          1 AGAAATAAAAA-GAAAA

                            
       2261 AGAAATAAAAAGAAAA
          1 AGAAATAAAAAGAAAA

             
       2277 A
          1 A

       2278 CAACTATTTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    6  0.38
  17   10  0.62

ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06


Consensus pattern (16 bp):   
AGAAATAAAAAGAAAA
Done.