Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023323.1 Corchorus olitorius cultivar O-4 contig23356, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10108
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31


Found at i:1534 original size:29 final size:30

Alignment explanation


    Indices: 1502--1560  Score: 93
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       1492 ACTTACCAAT

                                          
       1502 TTTA-TTAATTTCCAAAATCTTCTTTTGGA
          1 TTTATTTAATTTCCAAAATCTTCTTTTGGA

                    *      *              
       1531 TTTATTTATTTTCCAGAATCTTCTTTTGGA
          1 TTTATTTAATTTCCAAAATCTTCTTTTGGA

       1561 ATTACCTAAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  29    4  0.15
  30   23  0.85

ACGTcount: A:0.24, C:0.14, G:0.08, T:0.54


Consensus pattern (30 bp):   
TTTATTTAATTTCCAAAATCTTCTTTTGGA

Found at i:4777 original size:19 final size:18

Alignment explanation


    Indices: 4744--4779  Score: 54
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       4734 TTGAAATAAT

                              
       4744 TCTTCAAAAATCTTCAAG
          1 TCTTCAAAAATCTTCAAG

                     *        
       4762 TCTTCAAATTATCTTCAA
          1 TCTTCAAA-AATCTTCAA

       4780 TAAGTCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    8  0.50
  19    8  0.50

ACGTcount: A:0.36, C:0.22, G:0.03, T:0.39


Consensus pattern (18 bp):   
TCTTCAAAAATCTTCAAG
Done.