Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023332.1 Corchorus olitorius cultivar O-4 contig23365, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59417

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7953--7982
14
2.1
14
93
0
51
26
0
36
36
1.57
8796--9231
226
1.9
226
98
0
845
27
19
15
37
1.92
10717--10971
85
3.0
85
98
0
483
41
8
16
33
1.78
13151--13605
241
1.9
241
85
3
630
43
15
11
28
1.82
16398--16457
31
1.9
31
83
6
77
26
13
3
56
1.52
17158--17211
22
2.3
24
81
12
60
25
20
5
48
1.71
19297--19338
15
2.7
15
85
3
57
69
14
4
11
1.34
20096--20121
11
2.4
11
100
0
52
69
7
15
7
1.35
22521--22548
5
5.6
5
100
0
56
21
17
21
39
1.93
23234--23358
36
3.5
36
93
3
209
30
13
17
38
1.89
27158--27224
21
3.2
21
68
16
66
49
16
5
28
1.69
27148--27227
42
1.9
42
100
0
160
45
17
6
31
1.73
27291--27395
55
1.9
56
94
2
185
39
1
21
37
1.65
28895--29334
30
14.7
30
89
1
578
30
18
20
29
1.97
30746--30827
41
2.0
41
95
0
146
46
2
32
18
1.62
32177--32228
27
1.9
27
96
0
95
7
21
7
63
1.46
32878--32916
12
3.2
12
82
13
53
53
2
35
7
1.43
32880--32914
15
2.3
15
90
0
52
57
2
37
2
1.29
48809--48851
21
2.0
22
86
4
61
39
20
4
34
1.74
51298--51330
16
2.1
16
94
0
57
39
6
15
39
1.72
55427--55522
41
2.3
41
85
0
138
44
12
16
26
1.83
57363--57404
15
2.7
15
92
3
66
64
14
9
11
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58149--58174
11
2.4
11
100
0
52
69
7
15
7
1.35
58766--58823
29
2.0
29
83
6
73
29
22
10
37
1.87

Tables:   1

The End!