Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023335.1 Corchorus olitorius cultivar O-4 contig23368, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 864

Length: 1441
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.27


Found at i:823 original size:16 final size:15

Alignment explanation


    Indices: 785--826  Score: 66
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        775 ATAGAGATTG

                      *    
        785 ACAGAAAACAATTAA
          1 ACAGAAAACATTTAA

                           
        800 ACAGAAAACATTTAA
          1 ACAGAAAACATTTAA

                        
        815 ACTAGAAAACAT
          1 AC-AGAAAACAT

        827 AGCAGAGTAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15   16  0.64
  16    9  0.36

ACGTcount: A:0.62, C:0.14, G:0.07, T:0.17


Consensus pattern (15 bp):   
ACAGAAAACATTTAA
Done.