Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01023336.1 Corchorus olitorius cultivar O-4 contig23369, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24613
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Found at i:364 original size:15 final size:16
Alignment explanation
Indices: 335--364 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
325 GTGTGAATTC
335 AAATTGATATTTTGAA
1 AAATTGATATTTTGAA
351 AAATTGAT-TTTTGA
1 AAATTGATATTTTGA
365 TAAACTTACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (16 bp):
AAATTGATATTTTGAA
Found at i:4560 original size:345 final size:344
Alignment explanation
Indices: 3927--4571 Score: 797
Period size: 345 Copynumber: 1.9 Consensus size: 344
3917 ATTAATAAAA
* *
3927 TTGAGGTTTTTACCCAAATTGATTATCTTAGCTTCTTTGTTCTAGTTTGAGCAAAACTTAGGGTT
1 TTGAGGTTTTCACCCAAATTGATTATCTTAGCTTCATTGTTCTAGTTTGAGCAAAACTTAGGGTT
*
3992 CTTCAATCTTGTAGAGTCCTCGCAAACAATTAAGTTATGATTCTTGATTGCTTGTGAATCTTGTG
66 CTTCAATCTTGTAGAGTCCTAGCAAACAATTAAGTTATGATTCTTGATTGCTTGTGAATCTTGTG
* ** * * **
4057 ATCTTAGGTGTTCAATTGCAGGTCTAATAGGCGGTCTAAGGCCGACGAAAGAAGAAGATTGCTTG
131 ATCTTAGGTGTACAATTGCAGGTCTAATAGAAGCTCTAAGGCCGACAAAAGAAGAAGATACCTT-
* ** * * * *
4122 GGTGAGATTGTCAACATACACATCTAGAAGTTGAAAGTTGTTCAAGTTGATTCTTGGCGGGTCAC
195 GGTGAGATGGTCAACATACACATCTAGAAGTTGAAAGAAGTTCAAGTCGAGTCTTGGAGAGTCAC
* * *
4187 AAGGGTGGATTTGAATCTTAAAACAACTAGATTCGTATCATCTACCTCCCTCTAGTAAACACAAG
260 AAGGCTAGATTTGAATCTTAAAACAACTAAATTCGTATCATCTACCTCCCTCTAGTAAACACAAG
4252 TTAAGTTTTCAATAAAGAAT
325 TTAAGTTTTCAATAAAGAAT
*
4272 TTGAGGTTATTCA-CCAATTTGATTATCTTAGCTTCATTGTTCTAGTTTGAGCAAAACTTAGGGT
1 TTGAGGTT-TTCACCCAAATTGATTATCTTAGCTTCATTGTTCTAGTTTGAGCAAAACTTAGGGT
* * * *
4336 TCTTCAATCTTTTAGAGTCCTAGCAAACAATTAAGTTGTGATTTCTTGGTTGTTTGTGAATCTTG
65 TCTTCAATCTTGTAGAGTCCTAGCAAACAATTAAGTTATGA-TTCTTGATTGCTTGTGAATCTTG
* * * *
4401 TGTTCTTGAGTTG-ACAATTGCAGGTCTAATTGAAGACT-TAAGGCCGACAAAAGAAGAGGAATC
129 TGATCTT-AGGTGTACAATTGCAGGTCTAATAGAAG-CTCTAAGGCCGACAAAAGAAGAAG-AT-
*
4464 ACCTT-GTGA-A-GGTCATCGAT-CTAATCATCTAGAAGTTG-AAGAAGTTCAAGTCGAGT-TTG
190 ACCTTGGTGAGATGGTCAAC-ATAC--A-CATCTAGAAGTTGAAAGAAGTTCAAGTCGAGTCTTG
* * ** *
4523 ATAGATTTTCAAGGCTAGATTTGAATC-TAATACAACTAAATTCGTATCA
251 -GAGAGTCACAAGGCTAGATTTGAATCTTAAAACAACTAAATTCGTATCA
4572 ATTGGTATCA
Statistics
Matches: 254, Mismatches: 35, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
344 6 0.02
345 121 0.48
346 104 0.41
347 20 0.08
348 3 0.01
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.35
Consensus pattern (344 bp):
TTGAGGTTTTCACCCAAATTGATTATCTTAGCTTCATTGTTCTAGTTTGAGCAAAACTTAGGGTT
CTTCAATCTTGTAGAGTCCTAGCAAACAATTAAGTTATGATTCTTGATTGCTTGTGAATCTTGTG
ATCTTAGGTGTACAATTGCAGGTCTAATAGAAGCTCTAAGGCCGACAAAAGAAGAAGATACCTTG
GTGAGATGGTCAACATACACATCTAGAAGTTGAAAGAAGTTCAAGTCGAGTCTTGGAGAGTCACA
AGGCTAGATTTGAATCTTAAAACAACTAAATTCGTATCATCTACCTCCCTCTAGTAAACACAAGT
TAAGTTTTCAATAAAGAAT
Found at i:17018 original size:27 final size:27
Alignment explanation
Indices: 16988--17042 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
16978 TGAAATTAAC
*
16988 TGATAAAGCAATGATCTTGAATAGGAT
1 TGATAAAGCAATGATCCTGAATAGGAT
*
17015 TGATAGAGCAATGATCCTGAATAGGAT
1 TGATAAAGCAATGATCCTGAATAGGAT
17042 T
1 T
17043 TAAACACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (27 bp):
TGATAAAGCAATGATCCTGAATAGGAT
Found at i:17093 original size:39 final size:39
Alignment explanation
Indices: 17012--17488 Score: 512
Period size: 39 Copynumber: 12.3 Consensus size: 39
17002 TCTTGAATAG
* **
17012 GATTGATAGAGCAATGATCCTGAATAGGATTTAAACACAAATT
1 GATTGATAAAGCAATGATCCTGAATAGGA-TT---CTGAAATT
*
17055 GATTGATAAAACAATGATCCTGAATAGGATTCTGAAATT
1 GATTGATAAAGCAATGATCCTGAATAGGATTCTGAAATT
* * **
17094 GATAGATTAAGCAATGATCCTGAATAGGATTTAAACACAAATT
1 GATTGATAAAGCAATGATCCTGAATAGGA-TT---CTGAAATT
17137 GATTGATAAAGCAATGATCCTGAATAGGATTCTGAAATT
1 GATTGATAAAGCAATGATCCTGAATAGGATTCTGAAATT
** * *
17176 GACAGATAAAGCAATGATCCAGAATAAGATTCTGAAATT
1 GATTGATAAAGCAATGATCCTGAATAGGATTCTGAAATT
* *
17215 GATTG----AGCAATGATTCTAAATAGGATTCTG-AA--
1 GATTGATAAAGCAATGATCCTGAATAGGATTCTGAAATT
* *
17247 -ATTGATAGAGCAATGATCCTGAATAGGATTCTAAAATT
1 GATTGATAAAGCAATGATCCTGAATAGGATTCTGAAATT
*
17285 GATTGATAAAGAAATGATCCTGAATAGGATTCTGAAATT
1 GATTGATAAAGCAATGATCCTGAATAGGATTCTGAAATT
*
17324 GATTGATAGAGCAATGATCCTGAATAGGATTCTG-AA--
1 GATTGATAAAGCAATGATCCTGAATAGGATTCTGAAATT
* *
17360 -ATTGATAGAGCAATGATCCTGAATAGGATTATGAAATT
1 GATTGATAAAGCAATGATCCTGAATAGGATTCTGAAATT
* * * *
17398 TACTGATAATGCAATGATCCTGAATAGGATTCTGAAGTT
1 GATTGATAAAGCAATGATCCTGAATAGGATTCTGAAATT
* * * * *
17437 AACTTAATAAAGCAATGATCCTGAATAGAATTC-AAACATA
1 GA-TTGATAAAGCAATGATCCTGAATAGGATTCTGAA-ATT
17477 GATTGATAAAGC
1 GATTGATAAAGC
17489 GAAATAGTTC
Statistics
Matches: 369, Mismatches: 47, Indels: 40
0.81 0.10 0.09
Matches are distributed among these distances:
31 4 0.01
34 2 0.01
35 75 0.20
36 4 0.01
38 2 0.01
39 188 0.51
40 30 0.08
42 4 0.01
43 60 0.16
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.29
Consensus pattern (39 bp):
GATTGATAAAGCAATGATCCTGAATAGGATTCTGAAATT
Found at i:17146 original size:82 final size:77
Alignment explanation
Indices: 17016--17469 Score: 484
Period size: 74 Copynumber: 5.9 Consensus size: 77
17006 GAATAGGATT
*
17016 GATAGAGCAATGATCCTGAATAGGATTTAAACACAAATTGATTGATAAAACAATGATCCTGAATA
1 GATA-AGCAATGATCCTGAATAGGA-TT---CACAAATTGATTGATAAAGCAATGATCCTGAATA
17081 GGATTCTGAAATTGATA
61 GGATTCTGAAATTGATA
17098 GATTAAGCAATGATCCTGAATAGGATTTAAACACAAATTGATTGATAAAGCAATGATCCTGAATA
1 GA-TAAGCAATGATCCTGAATAGGA-TT---CACAAATTGATTGATAAAGCAATGATCCTGAATA
*
17163 GGATTCTGAAATTGACA
61 GGATTCTGAAATTGATA
* * ** * *
17180 GATAAAGCAATGATCCAGAATAAGATTCTGAAATTGATTG----AGCAATGATTCTAAATAGGAT
1 GAT-AAGCAATGATCCTGAATAGGATTCACAAATTGATTGATAAAGCAATGATCCTGAATAGGAT
17241 TCTGAAATTGATA
65 TCTGAAATTGATA
*
17254 G---AGCAATGATCCTGAATAGGATTCTA-AAATTGATTGATAAAGAAATGATCCTGAATAGGAT
1 GATAAGCAATGATCCTGAATAGGATTC-ACAAATTGATTGATAAAGCAATGATCCTGAATAGGAT
*
17315 TCTGAAATTGATT
65 TCTGAAATTGATA
** *
17328 GATAGAGCAATGATCCTGAATAGGATTC-TGAA---ATTGATAGAGCAATGATCCTGAATAGGAT
1 GATA-AGCAATGATCCTGAATAGGATTCACAAATTGATTGATAAAGCAATGATCCTGAATAGGAT
* *
17389 TATGAAATTTACT-
65 TCTGAAATTGA-TA
** * * * *
17402 GATAATGCAATGATCCTGAATAGGATTCTGAAGTTAACTTAATAAAGCAATGATCCTGAATAGAA
1 GATAA-GCAATGATCCTGAATAGGATTCACAAATTGA-TTGATAAAGCAATGATCCTGAATAGGA
17467 TTC
64 TTC
17470 AAACATAGAT
Statistics
Matches: 325, Mismatches: 28, Indels: 41
0.82 0.07 0.10
Matches are distributed among these distances:
70 31 0.10
73 1 0.00
74 125 0.38
75 2 0.01
77 2 0.01
78 35 0.11
79 26 0.08
81 3 0.01
82 98 0.30
83 2 0.01
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.29
Consensus pattern (77 bp):
GATAAGCAATGATCCTGAATAGGATTCACAAATTGATTGATAAAGCAATGATCCTGAATAGGATT
CTGAAATTGATA
Found at i:17361 original size:113 final size:112
Alignment explanation
Indices: 17138--17469 Score: 472
Period size: 113 Copynumber: 3.0 Consensus size: 112
17128 ACACAAATTG
* * * *
17138 ATTGATAAAGCAATGATCCTGAATAGGATTCTGAAATTGACAGATAAAGCAATGATCCAGAATAA
1 ATTGATAGAGCAATGATCCTGAATAGGATTCTGAAATTGACTGATAAAGCAATGATCCTGAATAG
* *
17203 GATTCTGAAATTGA-T-T-GAGCAATGATTCTAAATAGGATTCTGAA
66 GATTCTGAAATTGATTATAGAGCAATGATCCTGAATAGGATTCTGAA
* * *
17247 ATTGATAGAGCAATGATCCTGAATAGGATTCTAAAATTGATTGATAAAGAAATGATCCTGAATAG
1 ATTGATAGAGCAATGATCCTGAATAGGATTCTGAAATTGACTGATAAAGCAATGATCCTGAATAG
17312 GATTCTGAAATTGATTGATAGAGCAATGATCCTGAATAGGATTCTGAA
66 GATTCTGAAATTGATT-ATAGAGCAATGATCCTGAATAGGATTCTGAA
* * *
17360 ATTGATAGAGCAATGATCCTGAATAGGATTATGAAATTTACTGATAATGCAATGATCCTGAATAG
1 ATTGATAGAGCAATGATCCTGAATAGGATTCTGAAATTGACTGATAAAGCAATGATCCTGAATAG
* * * *
17425 GATTCTGAAGTTAACTTAATAAAGCAATGATCCTGAATAGAATTC
66 GATTCTGAAATTGA-TT-ATAGAGCAATGATCCTGAATAGGATTC
17470 AAACATAGAT
Statistics
Matches: 198, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
109 72 0.36
110 1 0.01
112 1 0.01
113 97 0.49
114 27 0.14
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.30
Consensus pattern (112 bp):
ATTGATAGAGCAATGATCCTGAATAGGATTCTGAAATTGACTGATAAAGCAATGATCCTGAATAG
GATTCTGAAATTGATTATAGAGCAATGATCCTGAATAGGATTCTGAA
Found at i:17557 original size:22 final size:24
Alignment explanation
Indices: 17531--17597 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 24
17521 GGAGGATTTG
17531 TCAGAATTAATACCTGGAGG-TT-
1 TCAGAATTAATACCTGGAGGCTTA
* *
17553 TCAGATATT-GTGCCTGGAGGTCTTA
1 TCAGA-ATTAATACCTGGAGG-CTTA
* *
17578 TCAGGATTAATACCCGGAGG
1 TCAGAATTAATACCTGGAGG
17598 AATCTGAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
22 14 0.41
23 3 0.09
24 5 0.15
25 12 0.35
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (24 bp):
TCAGAATTAATACCTGGAGGCTTA
Found at i:17590 original size:47 final size:47
Alignment explanation
Indices: 17531--17624 Score: 125
Period size: 47 Copynumber: 2.0 Consensus size: 47
17521 GGAGGATTTG
* ** * *
17531 TCAGAATTAATACCTGGAGGTTTCAGATATTGTGCCTGGAGGTCTTA
1 TCAGAATTAATACCCGGAGGAATCAGAAATTGTGCCCGGAGGTCTTA
* *
17578 TCAGGATTAATACCCGGAGGAATCTGAAATTGTGCCCGGAGGTCTTA
1 TCAGAATTAATACCCGGAGGAATCAGAAATTGTGCCCGGAGGTCTTA
17625 CAAATGCAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (47 bp):
TCAGAATTAATACCCGGAGGAATCAGAAATTGTGCCCGGAGGTCTTA
Found at i:17896 original size:153 final size:152
Alignment explanation
Indices: 17575--17970 Score: 575
Period size: 153 Copynumber: 2.6 Consensus size: 152
17565 CCTGGAGGTC
**
17575 TTATCAGG-ATTAATACCCGGAGGAATCTGAAATTGTGCCCGGAGGTCTTACAAATGCAAACTCT
1 TTATC-GGAATTAATACCCGGAGGTTTCTGAAATTGTGCCCGGAGGTCTTACAAATGCAAACTCT
* *
17639 GAATAGAGACCTTGAGA-AAGGTTTTTTTTTTAAACTTAGACGCAACTTTGATTAACAACTTTAT
65 GAATAGAGACCTTGA-ACAAGGTTTTTTTTTTAAACTTAAACGCAACTTTGATTAACAACTTAAT
*
17703 GAAATGAAGTGATACCTGAAGGAT
129 GAAATGAAGTGATACCAGAAGGAT
* * * * *
17727 TTATCGGAATAAATACCCGGAGGTTTTTGAAATTGTGCTCGGAGGTCGTACAAATGCAAACTCTA
1 TTATCGGAATTAATACCCGGAGGTTTCTGAAATTGTGCCCGGAGGTCTTACAAATGCAAACTCTG
17792 AATAGAGACCTTGAACAAGGTTTTTTTTTTGAAACTTAAACGCAACTTTGATTAACAACTTAATG
66 AATAGAGACCTTGAACAAGGTTTTTTTTTT-AAACTTAAACGCAACTTTGATTAACAACTTAATG
17857 AAATG-AGATGATACCCAG-AGGAT
130 AAATGAAG-TGATA-CCAGAAGGAT
** * *
17880 TTATCGGAATTAATACCTAGAGGTTTCTGAAATTGTGCCCAGAGGTCTTACGAATGCAAACTCTG
1 TTATCGGAATTAATACCCGGAGGTTTCTGAAATTGTGCCCGGAGGTCTTACAAATGCAAACTCTG
* *
17945 AATAGAGTCCTTGAGCAAGGTTTTTT
66 AATAGAGACCTTGAACAAGGTTTTTT
17971 GAAACTTAAA
Statistics
Matches: 218, Mismatches: 21, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
151 3 0.01
152 85 0.39
153 127 0.58
154 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.31
Consensus pattern (152 bp):
TTATCGGAATTAATACCCGGAGGTTTCTGAAATTGTGCCCGGAGGTCTTACAAATGCAAACTCTG
AATAGAGACCTTGAACAAGGTTTTTTTTTTAAACTTAAACGCAACTTTGATTAACAACTTAATGA
AATGAAGTGATACCAGAAGGAT
Found at i:19253 original size:18 final size:18
Alignment explanation
Indices: 19233--19267 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
19223 TTCTTCATCT
*
19233 TTTTC-CTTTCTTTTTCA
1 TTTTCGCTTTCCTTTTCA
19250 TTTTCGCTTTCCTTTTCA
1 TTTTCGCTTTCCTTTTCA
19268 AATTTCTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.06, C:0.26, G:0.03, T:0.66
Consensus pattern (18 bp):
TTTTCGCTTTCCTTTTCA
Found at i:19756 original size:16 final size:15
Alignment explanation
Indices: 19714--19766 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 15
19704 ACCAAGTGCC
19714 TTTTTCTTCTTCTTTT
1 TTTTTCTT-TTCTTTT
19730 TTTCGTT-TTTTCATTTT
1 TTT--TTCTTTTC-TTTT
19747 TTTTTCTTTTCTCTTT
1 TTTTTCTTTTCT-TTT
19763 TTTT
1 TTTT
19767 GATGGGAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
15 3 0.09
16 18 0.56
17 9 0.28
18 2 0.06
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.81
Consensus pattern (15 bp):
TTTTTCTTTTCTTTT
Found at i:19756 original size:18 final size:18
Alignment explanation
Indices: 19715--19766 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
19705 CCAAGTGCCT
19715 TTTTCTTCTTCTTTTTTTCG
1 TTTTC-TCTT-TTTTTTTCG
*
19735 TTTTTTCATTTTTTTTTC-
1 TTTTCTC-TTTTTTTTTCG
19753 TTTTCTCTTTTTTT
1 TTTTCTCTTTTTTT
19767 GATGGGAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
17 7 0.24
18 6 0.21
19 10 0.34
20 6 0.21
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.81
Consensus pattern (18 bp):
TTTTCTCTTTTTTTTTCG
Found at i:23793 original size:154 final size:154
Alignment explanation
Indices: 23528--24613 Score: 1713
Period size: 154 Copynumber: 7.1 Consensus size: 154
23518 AATAGTCCTC
*
23528 GATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAGAAACTTCACAGTGGACTAATCTCACCAA
1 GATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAA
*
23593 AATAATTATAGTTAGGCCATAAACATTGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGA
66 AATGATTATAGTTAGGCCATAAACATTGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGA
*
23658 TTCAAAATGGAACTAATGGGCCCT
131 TTCAAAACGGAACTAATGGGCCCT
* *
23682 GATAGTCCCAAAATAACAAGTGTTCGAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAA
1 GATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAA
* * *
23747 AATGATTATAGTTAGGTCATAAACAATGGAACGAAAAGCATTGAGGGTTGCCAAATCGAAGACGA
66 AATGATTATAGTTAGGCCATAAACATTGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGA
*
23812 TTCAAAACGGAACTAATGGGCCCC
131 TTCAAAACGGAACTAATGGGCCCT
23836 GATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAA
1 GATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAA
* *
23901 AATGATTATAGTTAGGCCACAAACATTGGAAAGAAAGGCATTGAGGGTTGCCAAATCGAAGACGA
66 AATGATTATAGTTAGGCCATAAACATTGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGA
*
23966 TTCAAAACGGAACTAATGGGCCCC
131 TTCAAAACGGAACTAATGGGCCCT
* * * * * *
23990 GAGAGGTCCAAAATAACAAGTGTACCAAATGAGCTAAAAACTTCAAAGTAGACTAATCTTACCAA
1 GATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAA
24055 AATGATTATAGTTAGGCCATAAACATTGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGA
66 AATGATTATAGTTAGGCCATAAACATTGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGA
*
24120 TTCAAAACGGAACTAAT-GGTCCT
131 TTCAAAACGGAACTAATGGGCCCT
* *
24143 CGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAAAGTGGACTAATCTTACCA
1 -GATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCA
* * * *
24208 AAATGATTAAAGTGAGGCCATAAACTTTGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACA
65 AAATGATTATAGTTAGGCCATAAACATTGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACG
**
24273 ATTCAAAACGTCACTAATGGG----
130 ATTCAAAACGGAACTAATGGGCCCT
* * *
24294 AATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAATACTTCACAGTAGACTAATCTCACCAA
1 GATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAA
* *
24359 AATGATTATTGTTAGGCCATAAACAATGGAAA-AAAAGGCA-TGAGGGTTGCCAAATCGAAGACG
66 AATGATTATAGTTAGGCCATAAACATTGGAAAGAAAA-GCATTGAGGGTTGCCAAATCGAAGACG
*
24422 ATTCAAAACGGAAATAATGGGCCCCT
130 ATTCAAAACGGAACTAATGGG-CCCT
* * *
24448 -ATAGTCCCAAAATAACAAGTGTTACAAATGACGTTAAAAACTTCACAGTGGACTAATCTCACCA
1 GATAGGCCCAAAATAACAAGTGTTCCAAATGA-GCTAAAAACTTCACAGTGGACTAATCTCACCA
*
24512 AAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACG
65 AAATGATTATAGTTAGGCCATAAACATTGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACG
*
24577 ATTCAAAATGGAACTAATGGGACCC-
130 ATTCAAAACGGAACTAATGGG-CCCT
*
24602 GAGAGGCCCAAA
1 GATAGGCCCAAA
Statistics
Matches: 859, Mismatches: 61, Indels: 23
0.91 0.06 0.02
Matches are distributed among these distances:
149 44 0.05
150 90 0.10
153 33 0.04
154 632 0.74
155 60 0.07
ACGTcount: A:0.41, C:0.18, G:0.20, T:0.21
Consensus pattern (154 bp):
GATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAA
AATGATTATAGTTAGGCCATAAACATTGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGA
TTCAAAACGGAACTAATGGGCCCT
Done.