Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023350.1 Corchorus olitorius cultivar O-4 contig23383, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72083

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5843--5894
25
2.0
26
85
10
72
21
5
9
63
1.45
6258--6335
27
2.9
27
90
0
111
38
21
19
20
1.94
11255--11293
18
2.1
18
85
4
51
43
15
15
25
1.86
12372--12436
28
2.3
28
80
15
73
24
12
13
49
1.77
17307--17334
7
4.0
7
100
0
56
85
14
0
0
0.59
17718--17769
15
3.4
15
71
23
54
51
15
17
15
1.76
17711--17773
31
2.0
31
100
0
126
52
15
19
12
1.74
20887--20920
13
2.4
14
90
9
52
26
0
5
67
1.13
36598--36683
32
2.7
32
83
7
104
32
40
19
6
1.79
36598--36684
16
5.4
16
78
9
88
33
40
19
6
1.78
37473--37572
16
6.2
16
79
9
105
36
33
19
12
1.88
37473--37572
48
2.1
48
84
3
130
36
33
19
12
1.88
41110--41219
54
2.0
54
100
0
220
33
18
12
35
1.88
45411--45453
18
2.3
18
84
11
52
41
2
0
55
1.12
67304--67359
29
1.9
29
85
0
76
51
16
12
19
1.75
67417--67448
16
2.0
16
93
0
55
68
3
12
15
1.32
67477--67506
8
3.8
8
95
0
51
50
3
26
20
1.64
67503--67603
47
2.1
47
87
1
139
39
19
23
16
1.92
69648--69705
26
2.2
26
75
0
62
13
22
1
62
1.41

Tables:   1

The End!