Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023353.1 Corchorus olitorius cultivar O-4 contig23386, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47217

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
438--591
77
2.0
77
100
0
308
50
12
14
22
1.76
617--643
2
13.5
2
100
0
54
51
0
0
48
1.00
2166--2198
11
2.8
12
95
4
59
36
18
9
36
1.82
5935--6016
32
2.6
32
80
0
101
29
21
1
47
1.59
6024--6134
28
4.0
28
91
3
163
28
20
0
50
1.49
6025--6133
55
2.0
55
89
3
166
29
21
0
49
1.49
6089--6443
67
5.3
67
95
0
631
30
18
1
48
1.57
8844--8883
15
2.6
16
92
4
64
15
10
10
65
1.48
15984--16010
2
13.5
2
100
0
54
51
0
0
48
1.00
19193--19238
24
1.9
24
90
0
74
19
13
23
43
1.86
28541--28571
2
15.5
2
100
0
62
51
48
0
0
1.00
30043--30103
5
13.0
5
98
1
94
42
14
0
42
1.46
31080--31121
12
3.5
12
87
9
59
78
2
19
0
0.86
36433--36462
13
2.3
13
100
0
60
80
0
20
0
0.72
38344--38368
2
12.5
2
100
0
50
48
0
52
0
1.00
45616--45658
16
2.6
17
82
17
56
69
0
0
30
0.88
45620--45659
15
2.6
16
78
21
50
70
0
0
30
0.88
45613--45669
12
4.8
11
80
18
53
66
0
0
33
0.92
47175--47214
2
20.0
2
100
0
80
50
0
50
0
1.00

Tables:   1

The End!