Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023355.1 Corchorus olitorius cultivar O-4 contig23388, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7275
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34


Found at i:725 original size:2 final size:2

Alignment explanation


    Indices: 685--710  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

        675 TTAATAAAAG

                                                  
        685 TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA

        711 AAGGGTTTAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:6712 original size:24 final size:24

Alignment explanation


    Indices: 6680--6734  Score: 74
    Period size: 24  Copynumber: 2.3  Consensus size: 24

       6670 ACTTGACAAG

                *                   
       6680 GATAAGAAGACCATGAACACAATT
          1 GATATGAAGACCATGAACACAATT

                           *   *    
       6704 GATATGAAGACCATGCACATAATT
          1 GATATGAAGACCATGAACACAATT

              *    
       6728 GACATGA
          1 GATATGA

       6735 TCAATGGGAA


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.45, C:0.16, G:0.18, T:0.20


Consensus pattern (24 bp):   
GATATGAAGACCATGAACACAATT
Done.