Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023357.1 Corchorus olitorius cultivar O-4 contig23390, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4126
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34


Found at i:146 original size:25 final size:25

Alignment explanation


    Indices: 112--160  Score: 98
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        102 TAGAGAGTCT

                                     
        112 GCATGCATCATAATCTTAAAATATG
          1 GCATGCATCATAATCTTAAAATATG

                                    
        137 GCATGCATCATAATCTTAAAATAT
          1 GCATGCATCATAATCTTAAAATAT

        161 ACCATAATTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33


Consensus pattern (25 bp):   
GCATGCATCATAATCTTAAAATATG

Found at i:3412 original size:24 final size:24

Alignment explanation


    Indices: 3380--3437  Score: 80
    Period size: 24  Copynumber: 2.4  Consensus size: 24

       3370 AATGGGAATT

                      *    *        
       3380 GGTGGAGGAATATTCTGATTCTGA
          1 GGTGGAGGAACATTCCGATTCTGA

                     * *            
       3404 GGTGGAGGAGCGTTCCGATTCTGA
          1 GGTGGAGGAACATTCCGATTCTGA

                      
       3428 GGTGGAGGAA
          1 GGTGGAGGAA

       3438 GTGCAGGTGG


Statistics
Matches: 29,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  24   29  1.00

ACGTcount: A:0.22, C:0.10, G:0.41, T:0.26


Consensus pattern (24 bp):   
GGTGGAGGAACATTCCGATTCTGA
Done.