Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023359.1 Corchorus olitorius cultivar O-4 contig23392, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14407
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31


Found at i:6198 original size:22 final size:22

Alignment explanation


    Indices: 6163--6206  Score: 56
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       6153 GATGCATAAA

                                   
       6163 AAGAAATCTTAAATCT-AAAAAC
          1 AAGAAATCTTAAAT-TGAAAAAC

                                   
       6185 AAGAAA-CTTAAAATTGAAAAAC
          1 AAGAAATCTT-AAATTGAAAAAC

       6207 TAAACCTATA


Statistics
Matches: 20,  Mismatches: 0, Indels: 4
        0.83            0.00        0.17

Matches are distributed among these distances:
  21    4  0.20
  22   16  0.80

ACGTcount: A:0.61, C:0.11, G:0.07, T:0.20


Consensus pattern (22 bp):   
AAGAAATCTTAAATTGAAAAAC

Found at i:12329 original size:28 final size:28

Alignment explanation


    Indices: 12297--12352  Score: 112
    Period size: 28  Copynumber: 2.0  Consensus size: 28

      12287 CCTAAGGTTT

                                        
      12297 GTGGTATTTGTTCAGAAGGACACTTTAC
          1 GTGGTATTTGTTCAGAAGGACACTTTAC

                                        
      12325 GTGGTATTTGTTCAGAAGGACACTTTAC
          1 GTGGTATTTGTTCAGAAGGACACTTTAC

      12353 TGATAAGAGC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36


Consensus pattern (28 bp):   
GTGGTATTTGTTCAGAAGGACACTTTAC
Done.