Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023360.1 Corchorus olitorius cultivar O-4 contig23393, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4036
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:477 original size:21 final size:21

Alignment explanation


    Indices: 452--492  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        442 TTAGAAACCC

                                  
        452 TAGTACCACTTAG-ATCCAATT
          1 TAGTACCACTT-GTATCCAATT

                                
        473 TAGTACCACTTGTATCCAAT
          1 TAGTACCACTTGTATCCAAT

        493 AGGGTTTAAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  20    1  0.05
  21   18  0.95

ACGTcount: A:0.32, C:0.24, G:0.10, T:0.34


Consensus pattern (21 bp):   
TAGTACCACTTGTATCCAATT

Found at i:2433 original size:26 final size:23

Alignment explanation


    Indices: 2387--2433  Score: 67
    Period size: 26  Copynumber: 1.9  Consensus size: 23

       2377 TCCTTCTACT

                                   
       2387 CATCTATCATCAAGTTTTTCATC
          1 CATCTATCATCAAGTTTTTCATC

                                    
       2410 CATCTCATCCATCAAAGTTTTTCA
          1 CATCT-AT-CATC-AAGTTTTTCA

       2434 AATTTTCTAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  23    5  0.24
  24    2  0.10
  25    4  0.19
  26   10  0.48

ACGTcount: A:0.28, C:0.28, G:0.04, T:0.40


Consensus pattern (23 bp):   
CATCTATCATCAAGTTTTTCATC
Done.