Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023367.1 Corchorus olitorius cultivar O-4 contig23400, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3747
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28


Found at i:279 original size:21 final size:21

Alignment explanation


    Indices: 255--367  Score: 167
    Period size: 21  Copynumber: 5.4  Consensus size: 21

        245 CTTAGGCAAT

                         *       
        255 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
        276 TCCAATGATCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
        297 TCCAATGAACTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                                  
        318 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                                  
        339 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        360 TCCAATGA
          1 TCCAATGA

        368 ACTTCTAGCA


Statistics
Matches: 87,  Mismatches: 4, Indels: 2
        0.94            0.04        0.02

Matches are distributed among these distances:
  20    3  0.03
  21   84  0.97

ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.