Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002337.1 Corchorus olitorius cultivar O-4 contig02337, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3257
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28


Found at i:441 original size:6 final size:6

Alignment explanation


    Indices: 430--523  Score: 188
    Period size: 6  Copynumber: 15.7  Consensus size: 6

        420 ATAATAGGCT

                                                                   
        430 TGATGC TGATGC TGATGC TGATGC TGATGC TGATGC TGATGC TGATGC
          1 TGATGC TGATGC TGATGC TGATGC TGATGC TGATGC TGATGC TGATGC

                                                                 
        478 TGATGC TGATGC TGATGC TGATGC TGATGC TGATGC TGATGC TGAT
          1 TGATGC TGATGC TGATGC TGATGC TGATGC TGATGC TGATGC TGAT

        524 TCATCACGGT


Statistics
Matches: 88,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   88  1.00

ACGTcount: A:0.17, C:0.16, G:0.33, T:0.34


Consensus pattern (6 bp):   
TGATGC

Done.