Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023371.1 Corchorus olitorius cultivar O-4 contig23404, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3390
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30


Found at i:1379 original size:21 final size:21

Alignment explanation


    Indices: 1355--1467  Score: 183
    Period size: 21  Copynumber: 5.4  Consensus size: 21

       1345 CTTAGGCAAT

                         *   *   
       1355 TCCAATGAGCTTGAAACATTC
          1 TCCAATGAGCTTGGAACCTTC

                                 
       1376 TCCAATGAGCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                                 
       1397 TCCAATGAGCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                                *
       1418 TCCAATGAGCTTGGAACCTTT
          1 TCCAATGAGCTTGGAACCTTC

                                  
       1439 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
       1460 TCCAATGA
          1 TCCAATGA

       1468 TCTCCTAGCA


Statistics
Matches: 87,  Mismatches: 4, Indels: 2
        0.94            0.04        0.02

Matches are distributed among these distances:
  20    3  0.03
  21   84  0.97

ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.