Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023376.1 Corchorus olitorius cultivar O-4 contig23409, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44440

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2135--2268
21
6.4
21
91
1
182
27
26
17
29
1.97
2695--2736
21
2.0
21
90
0
66
16
16
28
38
1.91
3584--3630
26
1.9
24
87
12
69
27
27
4
40
1.75
10701--10762
22
2.8
22
82
4
81
37
8
14
40
1.76
10745--10896
22
6.9
22
73
15
91
36
11
14
37
1.83
11047--11122
22
3.6
21
75
18
77
38
6
14
40
1.72
10907--11378
251
1.9
252
84
5
650
37
10
16
35
1.83
11320--11489
90
1.9
91
85
3
236
38
10
14
36
1.80
11140--11612
22
21.6
22
70
16
241
36
9
16
36
1.82
11538--11653
42
2.9
39
81
8
128
37
7
13
40
1.74
11415--11652
105
2.3
103
79
13
231
35
8
15
39
1.79
11538--11653
39
2.9
39
78
11
119
37
7
13
40
1.74
11518--11653
22
6.5
21
73
16
79
36
7
14
41
1.74
13707--13763
28
2.0
28
100
0
114
17
14
21
47
1.82
29585--29621
2
18.5
2
91
0
56
54
0
43
2
1.14
29579--29617
18
2.2
18
100
0
78
56
0
38
5
1.22
37189--37468
84
3.4
83
78
6
257
31
23
12
32
1.92
37758--37790
4
8.2
4
87
12
50
75
3
0
21
0.93
40455--40739
146
2.0
145
97
2
545
37
11
21
29
1.89

Tables:   1

The End!