Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023381.1 Corchorus olitorius cultivar O-4 contig23414, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7044
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32


Found at i:824 original size:30 final size:30

Alignment explanation


    Indices: 788--846  Score: 102
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        778 TCTTCAAGGG

                                           
        788 GGAGGGAATGATGCGCCCAA-GGCTTATCAT
          1 GGAGGGAATGATGCG-CCAAGGGCTTATCAT

                                         
        818 GGAGGGAATGATGCGCCAAGGGCTTATCA
          1 GGAGGGAATGATGCGCCAAGGGCTTATCA

        847 AGAACATCAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  29    4  0.14
  30   24  0.86

ACGTcount: A:0.27, C:0.19, G:0.36, T:0.19


Consensus pattern (30 bp):   
GGAGGGAATGATGCGCCAAGGGCTTATCAT
Done.