Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023386.1 Corchorus olitorius cultivar O-4 contig23419, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24032

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
358--404
21
2.2
22
88
3
69
53
6
12
27
1.63
1443--1555
21
5.4
21
84
6
133
26
23
20
29
1.99
4040--4120
33
2.5
33
85
0
99
24
8
22
44
1.81
4067--4168
33
3.1
32
80
8
98
29
5
21
43
1.76
6198--6302
52
2.0
52
96
0
192
22
24
29
22
1.99
6256--6299
22
2.0
22
86
0
61
25
25
22
27
2.00
12795--12849
21
2.6
21
91
0
92
29
18
27
25
1.98
14500--14591
21
4.4
21
93
2
141
26
28
17
28
1.98
15670--15710
21
2.0
21
90
0
64
36
7
24
31
1.83
17234--17275
15
2.7
15
92
3
66
64
14
9
11
1.50
22470--22499
11
2.7
11
100
0
60
36
10
43
10
1.72
22883--22953
21
3.4
21
96
0
124
23
28
21
26
1.99

Tables:   1

The End!