Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01023390.1 Corchorus olitorius cultivar O-4 contig23423, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97997
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Found at i:356 original size:88 final size:89
Alignment explanation
Indices: 203--381 Score: 315
Period size: 88 Copynumber: 2.0 Consensus size: 89
193 TCAGTGTCCC
*
203 AACTTTTCGAATCGCCTCAATTTGGTCCAAAACGTTAGAATTGACCGGGAATGTTCTACATGTGT
1 AACTTTTCGAATCGCCTCAATTTGGTCCAAAACGTTAGAATTGACCGGGAATGTTCTACACGTGT
268 CATAAAAAGTGCGTGAACCAATTA
66 CATAAAAAGTGCGTGAACCAATTA
* * *
292 AACTTTTCGAATCGTCTCAATTTGGT-CAAAACGTTAGAATTGACTGGGAGTGTTCTACACGTGT
1 AACTTTTCGAATCGCCTCAATTTGGTCCAAAACGTTAGAATTGACCGGGAATGTTCTACACGTGT
356 CATAAAAAGTGCGTGAACCAATTA
66 CATAAAAAGTGCGTGAACCAATTA
380 AA
1 AA
382 AGGTGATACG
Statistics
Matches: 86, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
88 61 0.71
89 25 0.29
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.30
Consensus pattern (89 bp):
AACTTTTCGAATCGCCTCAATTTGGTCCAAAACGTTAGAATTGACCGGGAATGTTCTACACGTGT
CATAAAAAGTGCGTGAACCAATTA
Found at i:663 original size:2 final size:2
Alignment explanation
Indices: 656--681 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
646 AAATTGACTA
656 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
682 TACTATACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1505 original size:2 final size:2
Alignment explanation
Indices: 1498--1541 Score: 65
Period size: 2 Copynumber: 23.0 Consensus size: 2
1488 TCTCCATGCT
*
1498 TA TA TA TA TA -A TA TA GA TA TA TA TA TA TA TA TA -A TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1538 TA TA
1 TA TA
1542 CCTTCTATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (2 bp):
TA
Found at i:1528 original size:23 final size:23
Alignment explanation
Indices: 1498--1541 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
1488 TCTCCATGCT
1498 TATATATATAATATAGATATATA
1 TATATATATAATATAGATATATA
*
1521 TATATATATAATATATATATA
1 TATATATATAATATAGATATA
1542 CCTTCTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
TATATATATAATATAGATATATA
Found at i:6411 original size:29 final size:29
Alignment explanation
Indices: 6378--6435 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
6368 GAGAGAGTTA
6378 CTGAAAACCAAAGAAAGTGTATTGAGCTT
1 CTGAAAACCAAAGAAAGTGTATTGAGCTT
6407 CTGAAAACCAAAGAAAGTGTATTGAGCTT
1 CTGAAAACCAAAGAAAGTGTATTGAGCTT
6436 GGGGGAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (29 bp):
CTGAAAACCAAAGAAAGTGTATTGAGCTT
Found at i:11147 original size:18 final size:18
Alignment explanation
Indices: 11124--11167 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
11114 AATATATTAC
11124 AGCATTTCATAGTCACAT
1 AGCATTTCATAGTCACAT
**
11142 AGCATTTTGTTAGTCACAT
1 AGCA-TTTCATAGTCACAT
*
11161 GGCATTT
1 AGCATTT
11168 TAGCAGTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (18 bp):
AGCATTTCATAGTCACAT
Found at i:13897 original size:33 final size:33
Alignment explanation
Indices: 13859--13924 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
13849 AAAAGAATGA
* *
13859 AATTTAGTAATTAAAGTAA-AATGGGTAATATGG
1 AATTTAGTAAATAAAGTAATAA-AGGTAATATGG
13892 AATTTAGTAAATAAAGTAATAAAGGTAATATGG
1 AATTTAGTAAATAAAGTAATAAAGGTAATATGG
13925 TAAAAAGAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (33 bp):
AATTTAGTAAATAAAGTAATAAAGGTAATATGG
Found at i:13970 original size:20 final size:20
Alignment explanation
Indices: 13945--13984 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
13935 AAATAGTATT
13945 TTGGTAATTAAAGAGTAAAA
1 TTGGTAATTAAAGAGTAAAA
* *
13965 TTGGTATTTAATGAGTAAAA
1 TTGGTAATTAAAGAGTAAAA
13985 ATGAAATTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.20, T:0.35
Consensus pattern (20 bp):
TTGGTAATTAAAGAGTAAAA
Found at i:14029 original size:41 final size:40
Alignment explanation
Indices: 13978--14074 Score: 140
Period size: 41 Copynumber: 2.4 Consensus size: 40
13968 GTATTTAATG
* *
13978 AGTAAAAATGAAATTTGTTAACTAAGGTTAAATGGTAAAT
1 AGTAAAAATGAAATTTGGTAACTAAGGTTAAATAGTAAAT
**
14018 AGTAAAAAATGAAATGCGGTAACTAAGGTTAAATAGTAAAT
1 AGT-AAAAATGAAATTTGGTAACTAAGGTTAAATAGTAAAT
*
14059 GGTAAAAATGAAATTT
1 AGTAAAAATGAAATTT
14075 AGTCATTAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
40 14 0.29
41 35 0.71
ACGTcount: A:0.49, C:0.03, G:0.19, T:0.29
Consensus pattern (40 bp):
AGTAAAAATGAAATTTGGTAACTAAGGTTAAATAGTAAAT
Found at i:14098 original size:67 final size:68
Alignment explanation
Indices: 14013--14161 Score: 176
Period size: 67 Copynumber: 2.2 Consensus size: 68
14003 GGTTAAATGG
* *
14013 TAAATAGTAAAAAATGAAATGCGGTAACTAAGG-TTAAATAGTAAATGGT-AAAAATGAAATTTA
1 TAAAGAGT-AAAAATGAAATGCGGTAACT-AGGATTAAAGAGTAAATGGTAAAAAATGAAATTTA
*
14076 GTCAT
64 GTAAT
** * ** *
14081 TAAAGAGTAAAAATGAAATTTGGTAACTAGGATTAAAGGGTATTTGGTAAAAAAATGAAATTTGG
1 TAAAGAGTAAAAATGAAATGCGGTAACTAGGATTAAAGAGTAAATGGT-AAAAAATGAAATTTAG
14146 TAAT
65 TAAT
14150 TAAAGAGTAAAA
1 TAAAGAGTAAAA
14162 TGGGATTTGG
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
66 3 0.04
67 30 0.43
68 7 0.10
69 29 0.42
ACGTcount: A:0.50, C:0.03, G:0.19, T:0.28
Consensus pattern (68 bp):
TAAAGAGTAAAAATGAAATGCGGTAACTAGGATTAAAGAGTAAATGGTAAAAAATGAAATTTAGT
AAT
Found at i:15419 original size:25 final size:25
Alignment explanation
Indices: 15391--15443 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
15381 TCTAACATGA
*
15391 TTTCCTTTTT-GCGTTTTTCTTTCTC
1 TTTCCTTTTTCCCGTTTTTCTTT-TC
*
15416 TTTCCTTTTTCCCTTTTTTCTTTTC
1 TTTCCTTTTTCCCGTTTTTCTTTTC
15441 TTT
1 TTT
15444 TTCGGTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.00, C:0.25, G:0.04, T:0.72
Consensus pattern (25 bp):
TTTCCTTTTTCCCGTTTTTCTTTTC
Found at i:20475 original size:21 final size:21
Alignment explanation
Indices: 20451--20563 Score: 201
Period size: 21 Copynumber: 5.4 Consensus size: 21
20441 CTTAGGCAAT
*
20451 TCCAATGAGCTTGAAACCTTC
1 TCCAATGAGCTTGGAACCTTC
20472 TCCAATGAGCTTGGAACCTTC
1 TCCAATGAGCTTGGAACCTTC
20493 TCCAATGAGCTTGGAACCTTC
1 TCCAATGAGCTTGGAACCTTC
20514 TCCAATGAGCTTGGAACCTTC
1 TCCAATGAGCTTGGAACCTTC
20535 TCCAATGAGCTTGGAA-CTTGC
1 TCCAATGAGCTTGGAACCTT-C
20556 TCCAATGA
1 TCCAATGA
20564 TCTCCTAGCA
Statistics
Matches: 90, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
20 3 0.03
21 87 0.97
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (21 bp):
TCCAATGAGCTTGGAACCTTC
Found at i:22318 original size:33 final size:33
Alignment explanation
Indices: 22281--22385 Score: 115
Period size: 33 Copynumber: 3.2 Consensus size: 33
22271 ATTAGCATAC
*
22281 AAAACAGAATTT-GTTTCATCACAAACAACACCT
1 AAAACAG-ATTTAGTGTCATCACAAACAACACCT
22314 AAAACAGATTTAGTGTCATCACAAACAACA-CT
1 AAAACAGATTTAGTGTCATCACAAACAACACCT
** * * * *
22346 CAAATTAGGTTTAGTATCATCGCAAACAACATCT
1 -AAAACAGATTTAGTGTCATCACAAACAACACCT
22380 AAAACA
1 AAAACA
22386 CTCTTTGCAA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
32 6 0.10
33 53 0.87
34 2 0.03
ACGTcount: A:0.46, C:0.22, G:0.09, T:0.24
Consensus pattern (33 bp):
AAAACAGATTTAGTGTCATCACAAACAACACCT
Found at i:23820 original size:25 final size:24
Alignment explanation
Indices: 23783--23829 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
23773 CTAGAAAATT
23783 TGAAAAACTTTGATGGATGAGATGTA
1 TGAAAAACTTTGAT-GAT-AGATGTA
23809 TGAAAAAC-TTGATGATAGATG
1 TGAAAAACTTTGATGATAGATG
23830 AATAGAAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.24
24 3 0.14
25 5 0.24
26 8 0.38
ACGTcount: A:0.40, C:0.04, G:0.26, T:0.30
Consensus pattern (24 bp):
TGAAAAACTTTGATGATAGATGTA
Found at i:24733 original size:21 final size:21
Alignment explanation
Indices: 24704--24795 Score: 150
Period size: 21 Copynumber: 4.4 Consensus size: 21
24694 CTTAGGCAAT
*
24704 TCCAATGAGCTTGAAACCTTC
1 TCCAATGAGCTTGGAACCTTC
*
24725 TCTAATGAGCTTGGAACCTTC
1 TCCAATGAGCTTGGAACCTTC
24746 TCCAATGAGCTTGGAACCTTC
1 TCCAATGAGCTTGGAACCTTC
24767 TCCAATGAGCTTGGAA-CTTGC
1 TCCAATGAGCTTGGAACCTT-C
24788 TCCAATGA
1 TCCAATGA
24796 TCTCCTAGCA
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 3 0.04
21 64 0.96
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (21 bp):
TCCAATGAGCTTGGAACCTTC
Found at i:25855 original size:19 final size:17
Alignment explanation
Indices: 25814--25853 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
25804 TGTTTACATT
25814 TGTGTGGAATATCCATA
1 TGTGTGGAATATCCATA
*
25831 TGTGTGGAATATTCATA
1 TGTGTGGAATATCCATA
25848 TGTGTG
1 TGTGTG
25854 TGTCAGGTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.25, C:0.07, G:0.28, T:0.40
Consensus pattern (17 bp):
TGTGTGGAATATCCATA
Found at i:31272 original size:24 final size:24
Alignment explanation
Indices: 31240--31287 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
31230 ATCACTTATC
31240 ATTCTTCACATCCTACAACTACCT
1 ATTCTTCACATCCTACAACTACCT
31264 ATTCTTCACATCCTACAACTACCT
1 ATTCTTCACATCCTACAACTACCT
31288 CTCCCTATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.38, G:0.00, T:0.33
Consensus pattern (24 bp):
ATTCTTCACATCCTACAACTACCT
Found at i:32013 original size:17 final size:18
Alignment explanation
Indices: 31981--32014 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
31971 GAAAATTTGA
31981 AATTTTATTTCAAAAATC
1 AATTTTATTTCAAAAATC
*
31999 AATTTT-TTTCCAAAAT
1 AATTTTATTTCAAAAAT
32015 TGGGGAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47
Consensus pattern (18 bp):
AATTTTATTTCAAAAATC
Found at i:33211 original size:21 final size:21
Alignment explanation
Indices: 33187--33256 Score: 113
Period size: 21 Copynumber: 3.3 Consensus size: 21
33177 GCTAGAAGTC
33187 CATTGGAGAAGGTTCCAAGCT
1 CATTGGAGAAGGTTCCAAGCT
*
33208 CATTGGGGAAGGTTCCAAGCT
1 CATTGGAGAAGGTTCCAAGCT
* *
33229 CATTGGAGAAGGTTTCAAACT
1 CATTGGAGAAGGTTCCAAGCT
33250 CATTGGA
1 CATTGGA
33257 ATTCCCTAAG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (21 bp):
CATTGGAGAAGGTTCCAAGCT
Found at i:34155 original size:25 final size:24
Alignment explanation
Indices: 34119--34165 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
34109 TCCTTCTATT
34119 CATCTATCATC-AAGTTTTTCATC
1 CATCTATCATCAAAGTTTTTCATC
34142 CATCTCATCCATCAAAGTTTTTCA
1 CATCT-AT-CATCAAAGTTTTTCA
34166 AATTTTCTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.24
24 2 0.10
25 4 0.19
26 10 0.48
ACGTcount: A:0.28, C:0.28, G:0.04, T:0.40
Consensus pattern (24 bp):
CATCTATCATCAAAGTTTTTCATC
Found at i:34649 original size:21 final size:21
Alignment explanation
Indices: 34623--34663 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
34613 TTTAAACCCT
34623 ATTGGAGATAAGTGGTACTAA
1 ATTGGAGATAAGTGGTACTAA
**
34644 ATTGGATCTAAGTGGTACTA
1 ATTGGAGATAAGTGGTACTA
34664 GGGTTTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.32
Consensus pattern (21 bp):
ATTGGAGATAAGTGGTACTAA
Found at i:40235 original size:12 final size:13
Alignment explanation
Indices: 40220--40262 Score: 52
Period size: 12 Copynumber: 3.3 Consensus size: 13
40210 CCCTAGCCCT
40220 AAAACTAGAAGA-
1 AAAACTAGAAGAG
40232 AAAACTAGAAGAG
1 AAAACTAGAAGAG
**
40245 AAAAAGAAGAAGAG
1 -AAAACTAGAAGAG
40259 AAAA
1 AAAA
40263 TTATAAGTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
12 12 0.44
13 4 0.15
14 11 0.41
ACGTcount: A:0.70, C:0.05, G:0.21, T:0.05
Consensus pattern (13 bp):
AAAACTAGAAGAG
Found at i:40248 original size:14 final size:14
Alignment explanation
Indices: 40220--40262 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
40210 CCCTAGCCCT
40220 AAAACTAG-A-AGA
1 AAAACTAGAAGAGA
40232 AAAACTAGAAGAGA
1 AAAACTAGAAGAGA
**
40246 AAAAGAAGAAGAGA
1 AAAACTAGAAGAGA
40260 AAA
1 AAA
40263 TTATAAGTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
12 8 0.30
13 1 0.04
14 18 0.67
ACGTcount: A:0.70, C:0.05, G:0.21, T:0.05
Consensus pattern (14 bp):
AAAACTAGAAGAGA
Found at i:42149 original size:21 final size:21
Alignment explanation
Indices: 42123--42193 Score: 108
Period size: 21 Copynumber: 3.4 Consensus size: 21
42113 TGCTAGGAGT
42123 TCATTGGAGCAA-GTTCCAAGC
1 TCATTGGAG-AAGGTTCCAAGC
42144 TCATTGGAGAAGGTTCCAAGC
1 TCATTGGAGAAGGTTCCAAGC
* *
42165 TCATTTGAGAAGGTTTCAAGC
1 TCATTGGAGAAGGTTCCAAGC
42186 TCATTGGA
1 TCATTGGA
42194 ATTGCCTAAG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 2 0.04
21 44 0.96
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (21 bp):
TCATTGGAGAAGGTTCCAAGC
Found at i:42447 original size:65 final size:65
Alignment explanation
Indices: 42366--42495 Score: 224
Period size: 65 Copynumber: 2.0 Consensus size: 65
42356 GCTTGCTATT
* *
42366 GATTCCAACATTCTGCACTAGCCCAGGCGTGGGTAGGCCAAGGGTACCCAATGCATGGGTTGGAC
1 GATTCAAACATTCTGCACTAGCCCAGGCGTGGGTAGGCCAAGGGTACCCAATGCATGGGTAGGAC
* *
42431 GATTCAAACTTTCTGCACTAGCCCAGGCGTGGGTAGGCCAAGGGTACCCCATGCATGGGTAGGAC
1 GATTCAAACATTCTGCACTAGCCCAGGCGTGGGTAGGCCAAGGGTACCCAATGCATGGGTAGGAC
42496 TAGTTTTTCC
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.23, C:0.26, G:0.31, T:0.20
Consensus pattern (65 bp):
GATTCAAACATTCTGCACTAGCCCAGGCGTGGGTAGGCCAAGGGTACCCAATGCATGGGTAGGAC
Found at i:48542 original size:21 final size:21
Alignment explanation
Indices: 48516--48607 Score: 150
Period size: 21 Copynumber: 4.4 Consensus size: 21
48506 TGCTAGGATT
48516 TCATTGGAGCAA-GTTCCAAGC
1 TCATTGGAG-AAGGTTCCAAGC
48537 TCATTGGAGAAGGTTCCAAGC
1 TCATTGGAGAAGGTTCCAAGC
*
48558 TCATTGGAGAAGATTCCAAGC
1 TCATTGGAGAAGGTTCCAAGC
*
48579 TCATTGGAGAAGGTTTCAAGC
1 TCATTGGAGAAGGTTCCAAGC
48600 TCATTGGA
1 TCATTGGA
48608 ATTGCCTAAG
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 2 0.03
21 65 0.97
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (21 bp):
TCATTGGAGAAGGTTCCAAGC
Found at i:52866 original size:20 final size:20
Alignment explanation
Indices: 52841--52879 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
52831 TCTGCCATAT
52841 ATGAATTGTGCTTGGTTTCA
1 ATGAATTGTGCTTGGTTTCA
52861 ATGAATTGTGCTTGGTTTC
1 ATGAATTGTGCTTGGTTTC
52880 TGGTCATCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.18, C:0.10, G:0.26, T:0.46
Consensus pattern (20 bp):
ATGAATTGTGCTTGGTTTCA
Found at i:54222 original size:28 final size:28
Alignment explanation
Indices: 54154--54223 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
54144 TTGGATGTGC
**
54154 AAATGACCAAAGCGCCCCTCGACATGCA
1 AAATGACCAAAATGCCCCTCGACATGCA
*
54182 AAATGACCAAAATGCCCCTGGACATGCA
1 AAATGACCAAAATGCCCCTCGACATGCA
*
54210 AAATGGCCAAAATG
1 AAATGACCAAAATG
54224 AGAAGCAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.40, C:0.29, G:0.19, T:0.13
Consensus pattern (28 bp):
AAATGACCAAAATGCCCCTCGACATGCA
Found at i:54780 original size:35 final size:35
Alignment explanation
Indices: 54613--54785 Score: 274
Period size: 35 Copynumber: 4.9 Consensus size: 35
54603 CTGAGTCAAC
* * *
54613 CTTTAAAGATGCTACACCGAGTCATCTAAATTCAA
1 CTTTGAAGATGCTACACCGAGTCATCTGAATTCAT
**
54648 CTTTGAAGATGCTACACCGAGTCATCCAAATTCAT
1 CTTTGAAGATGCTACACCGAGTCATCTGAATTCAT
*
54683 CTTTGATGATGCTACACCGAGTCATCTGAATTCAT
1 CTTTGAAGATGCTACACCGAGTCATCTGAATTCAT
*
54718 CTTTGAAGATGCTGCACCGAGTCATCTGAATTCAT
1 CTTTGAAGATGCTACACCGAGTCATCTGAATTCAT
*
54753 CTTTGAAGATGCTACACCGAGTCATCTGGATTC
1 CTTTGAAGATGCTACACCGAGTCATCTGAATTC
54786 CTGAGAATTT
Statistics
Matches: 128, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 128 1.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (35 bp):
CTTTGAAGATGCTACACCGAGTCATCTGAATTCAT
Found at i:69959 original size:5 final size:5
Alignment explanation
Indices: 69945--69987 Score: 61
Period size: 5 Copynumber: 8.8 Consensus size: 5
69935 AGTAAAACAT
* *
69945 CAAAA C-AAA CAAAA CAAAC CAAAA CAAAC CAAAA CAAAA CAAA
1 CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA CAAA
69988 GCAACCATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
4 4 0.12
5 29 0.88
ACGTcount: A:0.74, C:0.26, G:0.00, T:0.00
Consensus pattern (5 bp):
CAAAA
Found at i:69969 original size:10 final size:10
Alignment explanation
Indices: 69945--69987 Score: 70
Period size: 10 Copynumber: 4.4 Consensus size: 10
69935 AGTAAAACAT
69945 CAAAACAAA-
1 CAAAACAAAC
69954 CAAAACAAAC
1 CAAAACAAAC
69964 CAAAACAAAC
1 CAAAACAAAC
*
69974 CAAAACAAAA
1 CAAAACAAAC
69984 CAAA
1 CAAA
69988 GCAACCATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
9 9 0.28
10 23 0.72
ACGTcount: A:0.74, C:0.26, G:0.00, T:0.00
Consensus pattern (10 bp):
CAAAACAAAC
Found at i:74149 original size:28 final size:28
Alignment explanation
Indices: 74058--74150 Score: 125
Period size: 28 Copynumber: 3.4 Consensus size: 28
74048 TACTTGAAGC
* **
74058 GACCAAAATGCTCCTGGATGTGC-AAAT
1 GACCAAAATGCCCCTGGACATGCAAAAT
* *
74085 GACCAAAACGCCCTTGGACATGCAAAAT
1 GACCAAAATGCCCCTGGACATGCAAAAT
74113 GACCAAAATGCCCCTGGACATGCAAAAT
1 GACCAAAATGCCCCTGGACATGCAAAAT
*
74141 GGCCAAAATG
1 GACCAAAATG
74151 AGAAGCAAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 18 0.32
28 39 0.68
ACGTcount: A:0.38, C:0.26, G:0.20, T:0.16
Consensus pattern (28 bp):
GACCAAAATGCCCCTGGACATGCAAAAT
Found at i:74569 original size:19 final size:18
Alignment explanation
Indices: 74545--74580 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
74535 TGAAGACCAT
74545 TTGAAGATAATTTGAAGAC
1 TTGAAGAT-ATTTGAAGAC
*
74564 TTGAAGATTTTTGAAGA
1 TTGAAGATATTTGAAGA
74581 ACTATTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.39, C:0.03, G:0.22, T:0.36
Consensus pattern (18 bp):
TTGAAGATATTTGAAGAC
Found at i:79918 original size:14 final size:15
Alignment explanation
Indices: 79889--79920 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
79879 ATCTTTTTAA
79889 ATTTTTCCTTGCATT
1 ATTTTTCCTTGCATT
79904 ATTTTTCCTTG-ATT
1 ATTTTTCCTTGCATT
79918 ATT
1 ATT
79921 GCTTTGATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.16, C:0.16, G:0.06, T:0.62
Consensus pattern (15 bp):
ATTTTTCCTTGCATT
Found at i:81362 original size:19 final size:18
Alignment explanation
Indices: 81338--81373 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
81328 TGAAGACCAT
81338 TTGAAGATAATTTGAAGAC
1 TTGAAGAT-ATTTGAAGAC
*
81357 TTGAAGATTTTTGAAGA
1 TTGAAGATATTTGAAGA
81374 ACTATTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.39, C:0.03, G:0.22, T:0.36
Consensus pattern (18 bp):
TTGAAGATATTTGAAGAC
Found at i:81980 original size:18 final size:16
Alignment explanation
Indices: 81960--81990 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
81950 TATTTTCTCT
81960 TCTTC-TAGTTTTTAG
1 TCTTCTTAGTTTTTAG
81975 TCTTCTTAGTTTTTAG
1 TCTTCTTAGTTTTTAG
81991 GCAAGGGTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.13, C:0.13, G:0.13, T:0.61
Consensus pattern (16 bp):
TCTTCTTAGTTTTTAG
Found at i:85647 original size:21 final size:21
Alignment explanation
Indices: 85621--85662 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
85611 ACACAAAGAA
*
85621 GTTTCAAGCTCATTGGAGTTG
1 GTTTCAAGCTCATCGGAGTTG
85642 GTTTCAAGCTCATCGGAGTTG
1 GTTTCAAGCTCATCGGAGTTG
85663 CCTAAGATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.19, C:0.17, G:0.29, T:0.36
Consensus pattern (21 bp):
GTTTCAAGCTCATCGGAGTTG
Found at i:94202 original size:11 final size:11
Alignment explanation
Indices: 94183--94429 Score: 113
Period size: 11 Copynumber: 23.1 Consensus size: 11
94173 AAGATTTTTT
*
94183 TTTATTATTTA
1 TTTACTATTTA
94194 TTTACTATTTA
1 TTTACTATTTA
* *
94205 TTTTTA-TTTTTT
1 --TTTACTATTTA
94217 TTTAC-ATTT-
1 TTTACTATTTA
*
94226 TTAACTA-TTA
1 TTTACTATTTA
94236 --T-CTATTTA
1 TTTACTATTTA
*
94244 TTCACTATTTA
1 TTTACTATTTA
94255 --T-CTATTTA
1 TTTACTATTTA
94263 TTTACTATTTA
1 TTTACTATTTA
94274 TTT--T-TTTA
1 TTTACTATTTA
94282 -TTATCTATTTA
1 TTTA-CTATTTA
*
94293 TTTACCATTTA
1 TTTACTATTTA
94304 --T-CTATTTA
1 TTTACTATTTA
*
94312 TTTA-TTTTTAA
1 TTTACTATTT-A
94323 CTATTATCTATTTA
1 -T-TTA-CTATTTA
94337 TTTACTATTTA
1 TTTACTATTTA
*
94348 TTTA-TTTTTAA
1 TTTACTATTT-A
94359 TTATTATCTATTTA
1 -T-TTA-CTATTTA
94373 TTTACTATTTA
1 TTTACTATTTA
**
94384 TCTTTTTTATTTA
1 --TTTACTATTTA
* *
94397 TTT-TTAATTA
1 TTTACTATTTA
94407 -TTATCTATTTA
1 TTTA-CTATTTA
94418 TTTACTATTTA
1 TTTACTATTTA
94429 T
1 T
94430 CTTTTATTTA
Statistics
Matches: 182, Mismatches: 19, Indels: 70
0.67 0.07 0.26
Matches are distributed among these distances:
7 5 0.03
8 20 0.11
9 10 0.05
10 25 0.14
11 73 0.40
12 18 0.10
13 21 0.12
14 2 0.01
15 8 0.04
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (11 bp):
TTTACTATTTA
Found at i:94257 original size:19 final size:19
Alignment explanation
Indices: 94183--94439 Score: 184
Period size: 19 Copynumber: 13.8 Consensus size: 19
94173 AAGATTTTTT
94183 TTTAT-TATTTATTTACTA
1 TTTATCTATTTATTTACTA
* *
94201 TTTAT-T-TTTATTT-TTT
1 TTTATCTATTTATTTACTA
*
94217 TTTA-C-ATTT-TTAACTA
1 TTTATCTATTTATTTACTA
*
94233 -TTATCTATTTATTCACTA
1 TTTATCTATTTATTTACTA
94251 TTTATCTATTTATTTACTA
1 TTTATCTATTTATTTACTA
* *
94270 TTTATTTTTTTA-TTATCTA
1 TTTATCTATTTATTTA-CTA
* **
94289 TTTATTTA-CCATTTATCTA
1 TTTATCTATTTATTTA-CTA
* *
94308 TTTATTTATTT-TTAACTA
1 TTTATCTATTTATTTACTA
94326 -TTATCTATTTATTTACTA
1 TTTATCTATTTATTTACTA
* * *
94344 TTTATTTATTT-TTAATTA
1 TTTATCTATTTATTTACTA
94362 -TTATCTATTTATTTACTA
1 TTTATCTATTTATTTACTA
* *
94380 TTTATCTTTTTTATTTATTTTTAA
1 TTTATC-TATTTATTTA---CT-A
94404 TTATTATCTATTTATTTACTA
1 -T-TTATCTATTTATTTACTA
94425 TTTATCT-TTTATTTA
1 TTTATCTATTTATTTA
94440 TTAATTTAGT
Statistics
Matches: 191, Mismatches: 27, Indels: 42
0.73 0.10 0.16
Matches are distributed among these distances:
15 5 0.03
16 10 0.05
17 29 0.15
18 43 0.23
19 75 0.39
20 10 0.05
21 1 0.01
22 1 0.01
23 1 0.01
24 1 0.01
25 10 0.05
26 5 0.03
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTATCTATTTATTTACTA
Found at i:94264 original size:4 final size:4
Alignment explanation
Indices: 94249--94483 Score: 119
Period size: 4 Copynumber: 62.5 Consensus size: 4
94239 ATTTATTCAC
* * * *
94249 TATT TATC TATT TATT TA-C TATT TATT TTTT TA-T TATC TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
* * * * * *
94295 TA-C CATT TATC TATT TATT TATT T-TT AACTAT TATC TATT TATT TA-C
1 TATT TATT TATT TATT TATT TATT TATT TA-T-T TATT TATT TATT TATT
* * *
94342 TATT TATT TA-T T-TT TAAT TA-T TATC TATT TATT TA-C TATT TATCT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TAT-T
* * * * *
94387 TTTT TATT TA-T T-TT TAAT TA-T TATC TATT TATT TA-C TATT TATC
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
* * * *
94431 T-TT TATT TATT AATT TAGT TA-T TATC TATT TATT TATA TA-T TA-T
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
94475 TATT T-TT TA
1 TATT TATT TA
94484 GCTACCTATT
Statistics
Matches: 170, Mismatches: 41, Indels: 40
0.68 0.16 0.16
Matches are distributed among these distances:
3 41 0.24
4 122 0.72
5 5 0.03
6 2 0.01
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.66
Consensus pattern (4 bp):
TATT
Found at i:94399 original size:45 final size:45
Alignment explanation
Indices: 94344--94483 Score: 205
Period size: 45 Copynumber: 3.1 Consensus size: 45
94334 TTATTTACTA
94344 TTTATTTATTTTTAATTATTATCTATTTATTTACTATTTATCTTT
1 TTTATTTATTTTTAATTATTATCTATTTATTTACTATTTATCTTT
94389 TTTATTTATTTTTAATTATTATCTATTTATTTACTATTTATC--T
1 TTTATTTATTTTTAATTATTATCTATTTATTTACTATTTATCTTT
* *
94432 TTTATTTATTAATTTAGTTATTATCTATTTATTTA-TATATTATTATTT
1 TTTATTTATT--TTTAATTATTATCTATTTATTTACTAT-TTA-TCTTT
94480 TTTA
1 TTTA
94484 GCTACCTATT
Statistics
Matches: 87, Mismatches: 2, Indels: 9
0.89 0.02 0.09
Matches are distributed among these distances:
43 11 0.13
44 3 0.03
45 67 0.77
46 1 0.01
48 5 0.06
ACGTcount: A:0.26, C:0.05, G:0.01, T:0.68
Consensus pattern (45 bp):
TTTATTTATTTTTAATTATTATCTATTTATTTACTATTTATCTTT
Found at i:94410 original size:81 final size:78
Alignment explanation
Indices: 94225--94442 Score: 277
Period size: 81 Copynumber: 2.8 Consensus size: 78
94215 TTTTTACATT
* * *
94225 TTTAACTA-TTATCTATTTATTCACTATTTATCTATTTATTTAC----TATTTATTTTTTTATTA
1 TTTATCTATTTATTTATTT-TTAACTA-TTATCTATTTATTTACTATTTATTTATTTTTTTATTA
94285 TCTATTTATTTACCA
64 TCTATTTATTTACCA
94300 TTTATCTATTTATTTATTTTTAACTATTATCTATTTATTTACTATTTATTTATTTTTAATTATTA
1 TTTATCTATTTATTTATTTTTAACTATTATCTATTTATTTACTATTTATTTATTTTT--TTATTA
*
94365 TCTATTTATTTACTA
64 TCTATTTATTTACCA
* * * *
94380 TTTATCTTTTTTATTTATTTTTAATTATTATCTATTTATTTACTATTTATCT-TTTATTTATTA
1 TTTATC-TATTTATTTATTTTTAACTATTATCTATTTATTTACTATTTATTTATTTTTTTATTA
94443 ATTTAGTTAT
Statistics
Matches: 127, Mismatches: 8, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
74 16 0.13
75 13 0.10
76 9 0.07
78 17 0.13
80 30 0.24
81 42 0.33
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (78 bp):
TTTATCTATTTATTTATTTTTAACTATTATCTATTTATTTACTATTTATTTATTTTTTTATTATC
TATTTATTTACCA
Found at i:94437 original size:11 final size:12
Alignment explanation
Indices: 94249--94472 Score: 148
Period size: 11 Copynumber: 20.0 Consensus size: 12
94239 ATTTATTCAC
94249 TATTTATCTATT
1 TATTTATCTATT
94261 TATTTA-CTATT
1 TATTTATCTATT
94272 TA-TT-T-T-TT
1 TATTTATCTATT
94280 TA-TTATCTATT
1 TATTTATCTATT
*
94291 TATTTA-CCATT
1 TATTTATCTATT
* *
94302 TATCTATTTATT
1 TATTTATCTATT
**
94314 TATTT-T-TAAC
1 TATTTATCTATT
94324 TA-TTATCTATT
1 TATTTATCTATT
94335 TATTTA-CTATT
1 TATTTATCTATT
94346 TATTTAT-T-TT
1 TATTTATCTATT
94356 TAATTATTATCTATT
1 T-A-T-TTATCTATT
94371 TATTTA-CTATT
1 TATTTATCTATT
* *
94382 TATCTTTTTTATT
1 TAT-TTATCTATT
*
94395 TATTT-T-TAAT
1 TATTTATCTATT
94405 TA-TTATCTATT
1 TATTTATCTATT
94416 TATTTA-CTATT
1 TATTTATCTATT
94427 TATCTT-T-TATT
1 TAT-TTATCTATT
* * *
94438 TATTAATTTAGT
1 TATTTATCTATT
94450 TA-TTATCTATT
1 TATTTATCTATT
*
94461 TATTTATATATT
1 TATTTATCTATT
94473 ATTATTTTTT
Statistics
Matches: 168, Mismatches: 19, Indels: 50
0.71 0.08 0.21
Matches are distributed among these distances:
8 6 0.04
9 6 0.04
10 18 0.11
11 76 0.45
12 45 0.27
13 12 0.07
14 2 0.01
15 3 0.02
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.66
Consensus pattern (12 bp):
TATTTATCTATT
Found at i:94446 original size:19 final size:19
Alignment explanation
Indices: 94183--94475 Score: 158
Period size: 19 Copynumber: 16.1 Consensus size: 19
94173 AAGATTTTTT
*
94183 TTTAT-TATTTATTTACTA
1 TTTATCTATTTATTTATTA
*
94201 TTTAT-T-TTTATTT-TTT
1 TTTATCTATTTATTTATTA
* *
94217 TTTA-C-ATTT-TTAACTA
1 TTTATCTATTTATTTATTA
* *
94233 -TTATCTATTTATTCACTA
1 TTTATCTATTTATTTATTA
*
94251 TTTATCTATTTATTTACTA
1 TTTATCTATTTATTTATTA
* *
94270 TTTATTTTTTTA-TTATCTA
1 TTTATCTATTTATTTAT-TA
* **
94289 TTTATTTA-CCATTTATCTA
1 TTTATCTATTTATTTAT-TA
* * *
94308 TTTATTTATTT-TTAACTA
1 TTTATCTATTTATTTATTA
*
94326 -TTATCTATTTATTTACTA
1 TTTATCTATTTATTTATTA
* *
94344 TTTATTTATTT-TTAATTA
1 TTTATCTATTTATTTATTA
*
94362 -TTATCTATTTATTTACTA
1 TTTATCTATTTATTTATTA
*
94380 TTTATCTTTTTTATTTATT-
1 TTTATC-TATTTATTTATTA
*
94399 TTTAAT-TA-TTATCTATTTA
1 TTT-ATCTATTTATTTA-TTA
94418 TTTA-CTATTTATCTT-TTA
1 TTTATCTATTTAT-TTATTA
*
94436 TTTAT-TAATTTAGTTATTA
1 TTTATCT-ATTTATTTATTA
* * *
94455 TCTATTTATTTATATATTA
1 TTTATCTATTTATTTATTA
94474 TT
1 TT
94476 ATTTTTTAGC
Statistics
Matches: 215, Mismatches: 35, Indels: 49
0.72 0.12 0.16
Matches are distributed among these distances:
15 5 0.02
16 10 0.05
17 35 0.16
18 50 0.23
19 101 0.47
20 14 0.07
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTATCTATTTATTTATTA
Found at i:94483 original size:81 final size:81
Alignment explanation
Indices: 94231--94481 Score: 260
Period size: 81 Copynumber: 3.2 Consensus size: 81
94221 CATTTTTAAC
* * *
94231 TATTATCTATTTATTCACTATTTATCTATTTATTTACTATTTA-TT-TTTTT-A-T-TATCTATT
1 TATTATTTATTT-TTAACTA-TTATCTATTTATTTACTATTTATTTATTTTTAATTATATCTAGT
* *
94291 TATTTACCATTTATCTA-
64 TATTTACTATTTATTTAT
*
94308 T-TTATTTATTTTTAACTATTATCTATTTATTTACTATTTATTTATTTTTAATTATTATCTATTT
1 TATTATTTATTTTTAACTATTATCTATTTATTTACTATTTATTTATTTTTAATTA-TATCTAGTT
94372 ATTTACTATTTATCTT-T
65 ATTTACTATTTAT-TTAT
* *
94389 T-TTATTTATTTTTAATTATTATCTATTTATTTACTATTTATCTT-TTATTT-ATTA-ATTTAGT
1 TATTATTTATTTTTAACTATTATCTATTTATTTACTATTTAT-TTATT-TTTAATTATATCTAGT
94450 TA-TTATCTATTTATTTAT
64 TATTTA-CTATTTATTTAT
94468 ATATTA-TTATTTTT
1 -TATTATTTATTTTT
94482 TAGCTACCTA
Statistics
Matches: 153, Mismatches: 7, Indels: 25
0.83 0.04 0.14
Matches are distributed among these distances:
74 22 0.14
75 8 0.05
76 14 0.09
77 2 0.01
78 6 0.04
79 16 0.10
80 30 0.20
81 50 0.33
82 5 0.03
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (81 bp):
TATTATTTATTTTTAACTATTATCTATTTATTTACTATTTATTTATTTTTAATTATATCTAGTTA
TTTACTATTTATTTAT
Found at i:94554 original size:13 final size:13
Alignment explanation
Indices: 94533--94564 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
94523 CTAAACCTAT
94533 TTATTTTTTTAA-
1 TTATTTTTTTAAC
94545 TTATTTTTTTAAC
1 TTATTTTTTTAAC
94558 TTATTTT
1 TTATTTT
94565 CCTATTTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (13 bp):
TTATTTTTTTAAC
Done.