Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023391.1 Corchorus olitorius cultivar O-4 contig23424, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 791

Length: 1319
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26


Found at i:523 original size:21 final size:21

Alignment explanation


    Indices: 499--555  Score: 51
    Period size: 21  Copynumber: 2.7  Consensus size: 21

        489 ATCCAACATC

                                 
        499 TGAGGCAGGCACAAGAAGAAA
          1 TGAGGCAGGCACAAGAAGAAA

                *  ** *     *  * 
        520 TGAGACATTCGCAAGATGAGA
          1 TGAGGCAGGCACAAGAAGAAA

                     *     
        541 TGAGGCAGGAACAAG
          1 TGAGGCAGGCACAAG

        556 GTGTTATAAA


Statistics
Matches: 25,  Mismatches: 11, Indels: 0
        0.69            0.31        0.00

Matches are distributed among these distances:
  21   25  1.00

ACGTcount: A:0.42, C:0.14, G:0.33, T:0.11


Consensus pattern (21 bp):   
TGAGGCAGGCACAAGAAGAAA
Done.