Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023399.1 Corchorus olitorius cultivar O-4 contig23432, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15019
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30


Found at i:3876 original size:13 final size:14

Alignment explanation


    Indices: 3858--3887  Score: 53
    Period size: 13  Copynumber: 2.2  Consensus size: 14

       3848 CTTGGCATGG

                          
       3858 TTGATGATT-TTGT
          1 TTGATGATTCTTGT

                          
       3871 TTGATGATTCTTGT
          1 TTGATGATTCTTGT

               
       3885 TTG
          1 TTG

       3888 TTCAAATCTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    9  0.56
  14    7  0.44

ACGTcount: A:0.13, C:0.03, G:0.23, T:0.60


Consensus pattern (14 bp):   
TTGATGATTCTTGT

Done.