Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002340.1 Corchorus olitorius cultivar O-4 contig02340, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3814
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34


Found at i:3792 original size:31 final size:32

Alignment explanation


    Indices: 3747--3813  Score: 84
    Period size: 31  Copynumber: 2.1  Consensus size: 32

       3737 CCAGACATGT

                                      *      
       3747 ATGACCCTAAATCCAGCA-GACCCGAGACCCGA
          1 ATGACCCTAAATCCAG-ATGACCCGAAACCCGA

                    *           *           
       3779 ATGA-CCTGAATCCAGATGAGCCGAAACCCGA
          1 ATGACCCTAAATCCAGATGACCCGAAACCCGA

                
       3810 ATGA
          1 ATGA

       3814 T


Statistics
Matches: 31,  Mismatches: 3, Indels: 3
        0.84            0.08        0.08

Matches are distributed among these distances:
  30    1  0.03
  31   26  0.84
  32    4  0.13

ACGTcount: A:0.36, C:0.31, G:0.21, T:0.12


Consensus pattern (32 bp):   
ATGACCCTAAATCCAGATGACCCGAAACCCGA
Done.