Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023406.1 Corchorus olitorius cultivar O-4 contig23439, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101831

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2531--2630
43
2.4
43
79
12
109
40
29
12
19
1.87
6682--6745
34
1.9
33
90
3
101
35
20
14
29
1.92
7408--7473
5
13.2
5
72
23
50
57
0
3
39
1.14
7382--7477
31
3.4
29
80
15
96
55
1
4
39
1.26
7382--7449
31
2.2
33
87
10
99
52
1
4
41
1.30
7408--7486
13
5.8
14
71
22
62
56
1
2
39
1.21
7408--7479
21
3.6
20
81
9
85
58
0
2
38
1.13
7407--7479
7
10.6
7
72
24
57
57
0
2
39
1.13
10593--10728
70
2.0
67
89
4
209
37
16
6
38
1.75
14217--14250
17
2.0
17
100
0
68
35
29
5
29
1.81
14618--15008
178
2.2
177
84
4
502
31
12
18
37
1.88
25975--26045
28
2.5
28
88
0
97
38
29
16
15
1.90
31789--31847
25
2.4
24
82
2
82
33
18
6
40
1.77
35447--35770
46
6.8
46
79
6
310
20
28
17
34
1.95
35449--35766
96
3.3
95
79
5
286
20
28
17
33
1.95
35447--35770
144
2.3
144
86
1
454
20
28
17
34
1.95
35826--35935
39
2.8
36
81
14
105
17
25
22
34
1.96
35988--36190
80
2.5
82
86
3
295
11
25
23
39
1.89
35988--36202
41
5.3
41
75
10
226
11
26
22
39
1.88
36217--36449
40
5.8
40
89
4
328
16
30
19
33
1.94
36217--36449
79
2.9
80
86
5
319
16
30
19
33
1.94
41470--42481
504
2.0
504
94
0
1790
32
19
19
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47238--47270
16
2.1
16
94
0
57
24
3
6
66
1.28
47325--47361
2
18.5
2
88
0
56
45
2
2
48
1.30
48941--49009
28
2.5
28
90
0
102
40
23
17
18
1.91
60239--60327
36
2.5
36
79
0
106
29
21
29
20
1.98
62892--62977
26
3.1
26
69
18
75
25
9
31
33
1.88
62866--62977
56
2.0
56
96
0
206
25
9
29
34
1.88
62866--62954
26
3.1
29
68
18
87
26
8
28
35
1.87
70347--70379
6
5.5
6
92
0
57
15
3
0
81
0.80
70343--70379
18
2.1
17
95
5
65
16
5
0
78
0.93
77769--77835
33
2.0
34
94
2
118
59
13
2
23
1.48
79113--79157
18
2.5
19
79
17
51
68
0
2
28
1.01
79126--79164
6
6.5
6
85
11
53
71
0
0
28
0.86
93949--94148
69
2.9
69
93
2
321
22
14
17
47
1.82
95414--95606
103
1.9
103
87
0
287
37
12
12
36
1.82
99084--99181
48
2.0
49
92
5
164
27
12
33
26
1.92
99435--99496
13
4.8
13
79
0
70
41
17
6
33
1.75
99435--99490
26
2.2
26
93
0
94
42
17
5
33
1.72
100262--100357
48
2.0
48
97
0
183
39
27
9
23
1.85

Tables:   1

The End!