Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023407.1 Corchorus olitorius cultivar O-4 contig23440, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50755

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9085--9187
39
2.7
39
86
7
140
29
15
5
49
1.68
18304--18847
39
14.6
39
73
15
386
25
16
17
40
1.89
18373--18430
31
1.9
29
96
3
82
22
20
18
37
1.94
18304--18981
148
4.6
148
89
1
1019
25
17
17
40
1.90
18812--18868
25
2.2
26
84
9
80
26
17
17
38
1.92
18728--18942
103
2.1
103
83
7
267
26
16
17
39
1.91
18890--19017
39
3.3
38
77
9
143
25
18
17
39
1.92
18886--19032
77
1.9
78
87
6
219
25
19
16
39
1.91
19089--19154
30
2.2
30
86
0
96
16
22
15
45
1.85
19491--19552
13
4.8
13
75
0
61
40
17
8
33
1.79
19493--19543
26
2.0
26
92
0
84
41
17
7
33
1.79
23643--23673
7
4.3
7
95
4
53
58
16
0
25
1.38
25688--25865
91
2.0
91
95
0
320
35
16
20
28
1.94
28141--28176
19
1.9
18
88
5
54
41
2
22
33
1.68
31673--31698
13
2.0
13
100
0
52
53
30
0
15
1.42
35586--35625
15
2.6
16
92
4
64
65
12
10
12
1.49
41195--41248
26
2.0
27
89
7
83
48
11
1
38
1.50
41681--41720
15
2.6
15
84
4
53
67
12
7
12
1.41
46100--46289
8
23.8
8
67
14
70
62
2
10
25
1.39
46078--46144
24
2.8
24
80
8
82
59
1
16
22
1.45
46158--46266
19
5.4
19
71
21
71
62
1
8
27
1.34
46147--46298
4
39.5
4
65
17
63
65
1
7
26
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46189--46298
11
9.6
11
72
17
64
64
0
8
26
1.27
46189--46277
38
2.4
36
88
5
124
62
1
8
26
1.32
46164--46295
26
4.9
27
74
14
119
64
1
8
25
1.30
46178--46286
19
5.4
19
70
20
87
64
0
9
25
1.29
47843--47884
15
2.7
15
92
3
66
64
14
9
11
1.50

Tables:   1

The End!