Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023409.1 Corchorus olitorius cultivar O-4 contig23442, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31436

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
193--233
21
2.0
21
85
9
57
2
26
56
14
1.51
3029--3060
14
2.2
15
94
5
57
78
12
3
6
1.06
4367--4392
11
2.4
11
100
0
52
69
7
15
7
1.35
5916--5967
16
3.5
15
77
15
54
69
0
21
9
1.17
10820--10964
50
2.9
50
88
2
211
48
2
13
35
1.57
11046--11228
51
3.6
50
77
10
149
42
8
18
31
1.79
11740--12010
49
5.6
49
83
5
291
12
20
22
43
1.86
12012--12241
41
5.6
41
86
3
295
14
26
21
38
1.91
12012--12208
81
2.4
82
86
4
274
12
26
21
39
1.89
15652--15688
18
2.0
19
94
5
67
10
13
10
64
1.49
16256--16304
15
3.3
15
83
11
64
51
0
46
2
1.12
16353--16377
11
2.3
11
100
0
50
28
0
64
8
1.22
20873--20925
16
3.2
16
84
5
70
5
41
1
50
1.36
26630--26671
21
2.0
21
95
0
75
23
21
9
45
1.81

Tables:   1

The End!