Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023415.1 Corchorus olitorius cultivar O-4 contig23448, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70882

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5240--5301
27
2.3
27
91
0
97
35
27
19
17
1.94
12088--12159
36
2.0
36
100
0
144
16
16
25
41
1.89
12095--12155
21
3.2
21
60
26
53
16
16
24
42
1.88
15778--15817
21
1.9
21
94
0
71
27
15
20
37
1.92
20248--20441
83
2.3
84
91
4
311
30
9
20
39
1.84
21513--21656
62
2.3
61
84
10
202
35
13
13
38
1.83
21622--21748
52
2.4
52
82
6
139
28
17
17
37
1.92
28434--28495
33
1.9
32
83
3
79
14
48
24
12
1.79
38220--38257
17
2.2
17
95
0
67
7
23
21
47
1.77
39308--39371
28
2.3
28
88
0
92
43
25
14
17
1.86
39789--40031
36
6.8
35
89
3
310
32
22
16
27
1.96
39789--40031
108
2.3
107
86
2
344
32
22
16
27
1.96
51362--51393
12
2.8
12
95
4
57
40
0
50
9
1.35
52382--52415
17
2.0
17
94
0
59
8
23
20
47
1.78
53461--53527
28
2.4
28
87
0
98
43
22
16
17
1.88
53990--54057
29
2.4
29
82
4
86
16
16
25
42
1.87
59434--59631
104
1.9
105
93
4
346
32
24
22
20
1.98
68929--69014
38
2.2
40
85
6
113
59
9
18
12
1.60

Tables:   1

The End!