Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002342.1 Corchorus olitorius cultivar O-4 contig02342, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6015
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32


Found at i:1716 original size:29 final size:29

Alignment explanation


    Indices: 1683--1740  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       1673 ATTTCTCCTT

                                         
       1683 CTCAACTTGTATTCCCATCCTCTTTCTTC
          1 CTCAACTTGTATTCCCATCCTCTTTCTTC

                                         
       1712 CTCAACTTGTATTCCCATCCTCTTTCTTC
          1 CTCAACTTGTATTCCCATCCTCTTTCTTC

       1741 AAAATCCTCT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.14, C:0.38, G:0.03, T:0.45


Consensus pattern (29 bp):   
CTCAACTTGTATTCCCATCCTCTTTCTTC
Done.