Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023422.1 Corchorus olitorius cultivar O-4 contig23455, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19143

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
158--234
28
2.8
28
92
4
120
22
0
25
51
1.48
747--823
28
2.8
28
92
4
120
22
0
25
51
1.48
3343--3413
34
2.1
34
97
0
133
57
15
19
7
1.61
4484--4553
34
2.1
34
97
0
131
40
12
0
47
1.42
5296--5352
29
2.0
28
86
3
78
54
8
5
31
1.53
5417--5509
47
2.0
47
100
0
186
33
4
17
45
1.68
9609--9644
5
6.8
5
87
12
54
83
0
16
0
0.65
9603--9648
12
4.0
12
78
21
62
82
0
17
0
0.67
9603--9648
17
2.7
17
100
0
92
82
0
17
0
0.67
10978--11048
20
3.5
20
86
0
106
30
25
26
16
1.97
19015--19056
15
2.7
15
96
3
75
66
14
7
11
1.43

Tables:   1

The End!