Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023423.1 Corchorus olitorius cultivar O-4 contig23456, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2255
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:1378 original size:21 final size:21

Alignment explanation


    Indices: 1352--1401  Score: 82
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       1342 GGAATGGCGA

                        *        
       1352 TGGCACGGGCATGGCCGGTGG
          1 TGGCACGGGCATAGCCGGTGG

                      *          
       1373 TGGCACGGGCTTAGCCGGTGG
          1 TGGCACGGGCATAGCCGGTGG

                    
       1394 TGGCACGG
          1 TGGCACGG

       1402 TGAATGGGCG


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.10, C:0.24, G:0.50, T:0.16


Consensus pattern (21 bp):   
TGGCACGGGCATAGCCGGTGG

Found at i:1611 original size:21 final size:21

Alignment explanation


    Indices: 1587--1630  Score: 61
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       1577 AAGCAGGCTC

                                 
       1587 GACCGGGCAGGCGACGCAGAT
          1 GACCGGGCAGGCGACGCAGAT

                   *     *   *   
       1608 GACCGGGTAGGCGGCGCGGAT
          1 GACCGGGCAGGCGACGCAGAT

              
       1629 GA
          1 GA

       1631 GTCCGGGCGT


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.20, C:0.25, G:0.48, T:0.07


Consensus pattern (21 bp):   
GACCGGGCAGGCGACGCAGAT
Done.