Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023429.1 Corchorus olitorius cultivar O-4 contig23462, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7665
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:3237 original size:27 final size:27

Alignment explanation


    Indices: 3207--3300  Score: 143
    Period size: 27  Copynumber: 3.5  Consensus size: 27

       3197 AGTGCAATTG

                  *          *     *   
       3207 AAATGATCAAAATGCCCTTGGACGTGC
          1 AAATGACCAAAATGCCCCTGGACATGC

                   *                   
       3234 AAATGACTAAAATGCCCCTGGACATGC
          1 AAATGACCAAAATGCCCCTGGACATGC

                                     * 
       3261 AAATGACCAAAATGCCCCTGGACATTC
          1 AAATGACCAAAATGCCCCTGGACATGC

                         
       3288 AAATGACCAAAAT
          1 AAATGACCAAAAT

       3301 AAGAAGTAAA


Statistics
Matches: 61,  Mismatches: 6, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  27   61  1.00

ACGTcount: A:0.39, C:0.24, G:0.17, T:0.19


Consensus pattern (27 bp):   
AAATGACCAAAATGCCCCTGGACATGC
Done.