Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023439.1 Corchorus olitorius cultivar O-4 contig23472, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3618
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32


Found at i:2657 original size:49 final size:47

Alignment explanation


    Indices: 2585--2720  Score: 143
    Period size: 49  Copynumber: 2.9  Consensus size: 47

       2575 AATCCTTTAC

                               *                            
       2585 TTTTTAC-TGCACTTTTTCACAATTTTTACTACAAAATTGAACTTTCA
          1 TTTTTACTTGCACTTTTTCTCAATTTTTA-TACAAAATTGAACTTTCA

                                           *          *    * 
       2632 TTTTTACTTGCATCTTTTTCTCAATTTTTAAGACAAAATTGATCTTTTA
          1 TTTTTACTTGCA-CTTTTTCTCAATTTTT-ATACAAAATTGAACTTTCA

            *                  *  *                   
       2681 ATTTT-CATTGCACTTTTTATCTATTTTT-TGACAAAATTGA
          1 TTTTTAC-TTGCACTTTTTCTCAATTTTTAT-ACAAAATTGA

       2721 TTGTCACGCT


Statistics
Matches: 76,  Mismatches: 8, Indels: 10
        0.81            0.09        0.11

Matches are distributed among these distances:
  47   17  0.22
  48   19  0.25
  49   39  0.51
  50    1  0.01

ACGTcount: A:0.28, C:0.15, G:0.06, T:0.51


Consensus pattern (47 bp):   
TTTTTACTTGCACTTTTTCTCAATTTTTATACAAAATTGAACTTTCA
Done.