Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023440.1 Corchorus olitorius cultivar O-4 contig23473, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3473
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30


Found at i:2176 original size:16 final size:15

Alignment explanation


    Indices: 2138--2179  Score: 66
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       2128 ACAGAGATTG

                   *       
       2138 ACAGAAAGCAATTAA
          1 ACAGAAAACAATTAA

                           
       2153 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                        
       2168 ACTAGAAAACAA
          1 AC-AGAAAACAA

       2180 AGCAAAGTAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15   16  0.64
  16    9  0.36

ACGTcount: A:0.64, C:0.14, G:0.10, T:0.12


Consensus pattern (15 bp):   
ACAGAAAACAATTAA

Found at i:2955 original size:11 final size:11

Alignment explanation


    Indices: 2939--2964  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

       2929 CCTTTGCCTA

                       
       2939 AAAACTAGAAG
          1 AAAACTAGAAG

                       
       2950 AAAACTAGAAG
          1 AAAACTAGAAG

                
       2961 AAAA
          1 AAAA

       2965 GAAATTATCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.69, C:0.08, G:0.15, T:0.08


Consensus pattern (11 bp):   
AAAACTAGAAG
Done.