Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023441.1 Corchorus olitorius cultivar O-4 contig23474, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4267
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32


Found at i:3083 original size:42 final size:44

Alignment explanation


    Indices: 3036--3123  Score: 162
    Period size: 42  Copynumber: 2.0  Consensus size: 44

       3026 ATGATCATTT

                                                        
       3036 AAACGCGTGGTCGTGACTTTGATTCAGAATAAGGG-C-TTAGTA
          1 AAACGCGTGGTCGTGACTTTGATTCAGAATAAGGGCCTTTAGTA

                                                        
       3078 AAACGCGTGGTCGTGACTTTGATTCAGAATAAGGGCCTTTAGTA
          1 AAACGCGTGGTCGTGACTTTGATTCAGAATAAGGGCCTTTAGTA

              
       3122 AA
          1 AA

       3124 TTACGTGGGT


Statistics
Matches: 44,  Mismatches: 0, Indels: 2
        0.96            0.00        0.04

Matches are distributed among these distances:
  42   35  0.80
  43    1  0.02
  44    8  0.18

ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28


Consensus pattern (44 bp):   
AAACGCGTGGTCGTGACTTTGATTCAGAATAAGGGCCTTTAGTA
Done.