Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023448.1 Corchorus olitorius cultivar O-4 contig23481, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65617

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5314--5357
21
2.1
21
83
8
54
68
6
6
18
1.35
8800--8895
27
3.7
26
80
6
106
17
14
26
41
1.88
8857--8903
9
5.4
9
87
10
71
12
12
21
53
1.72
8855--8903
16
2.9
17
84
9
73
12
12
24
51
1.73
16683--16785
28
3.7
28
86
2
136
35
28
16
19
1.93
30658--31505
47
17.5
48
87
5
927
29
19
5
45
1.72
30658--31505
141
5.8
141
87
5
1043
29
19
5
45
1.72
31507--31566
22
2.8
22
87
2
77
18
25
1
55
1.52
32272--32296
8
3.1
8
100
0
50
36
52
0
12
1.39
33931--33979
7
7.3
7
80
19
52
4
12
0
83
0.77
33929--33979
19
2.6
19
90
3
84
3
13
0
82
0.81
41989--42030
15
2.7
15
92
3
66
11
9
14
64
1.50
45990--46123
28
4.7
28
88
8
191
17
15
24
42
1.88
45990--46123
57
2.3
59
93
3
229
17
15
24
42
1.88
64284--64325
21
2.0
21
90
4
68
26
19
16
38
1.92
64297--64388
31
2.9
31
80
3
103
19
21
23
34
1.96
64854--64897
23
1.9
23
95
0
79
56
0
0
43
0.99

Tables:   1

The End!