Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023450.1 Corchorus olitorius cultivar O-4 contig23483, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29575

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121--162
15
2.7
15
92
3
66
64
14
9
11
1.50
8796--8881
43
2.0
43
100
0
172
30
6
11
51
1.65
11368--11425
29
2.0
29
100
0
116
27
17
13
41
1.87
17467--17526
22
2.7
22
84
0
75
40
16
6
36
1.75
17471--17547
22
3.6
21
78
5
73
41
15
6
36
1.73
17597--17670
22
3.6
21
68
13
55
24
16
9
50
1.74
18977--19023
10
4.8
10
85
12
62
0
0
17
82
0.66
18977--19023
20
2.4
20
92
3
78
0
0
17
82
0.66
18977--19021
9
4.8
9
81
10
54
0
0
15
84
0.62
20753--20790
16
2.4
16
87
12
53
7
15
39
36
1.77
22031--22056
7
3.7
7
100
0
52
46
11
0
42
1.40
22416--22460
16
2.8
16
89
3
72
4
11
40
44
1.60
22469--22509
16
2.5
17
76
15
50
4
14
36
43
1.67
22911--23061
76
2.0
76
100
0
302
29
11
14
44
1.81
23487--23516
13
2.3
13
94
0
51
53
0
10
36
1.35
29060--29115
11
4.8
11
80
10
67
51
8
3
35
1.51
29060--29115
24
2.4
23
87
3
85
51
8
3
35
1.51
29246--29289
19
2.3
19
84
4
52
59
22
4
13
1.53

Tables:   1

The End!