Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023451.1 Corchorus olitorius cultivar O-4 contig23484, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2627
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33


Found at i:522 original size:21 final size:21

Alignment explanation


    Indices: 489--528  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        479 GCGTTTTATT

                                 
        489 CTTGTCAACTCTTT-AACTTC
          1 CTTGTCAACTCTTTCAACTTC

                    *           
        509 CTTGTTCATCTCTTTCAACT
          1 CTTG-TCAACTCTTTCAACT

        529 CAAACGATTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    4  0.24
  21    9  0.53
  22    4  0.24

ACGTcount: A:0.17, C:0.30, G:0.05, T:0.47


Consensus pattern (21 bp):   
CTTGTCAACTCTTTCAACTTC
Done.