Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023462.1 Corchorus olitorius cultivar O-4 contig23495, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9922
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:1073 original size:15 final size:15

Alignment explanation


    Indices: 1044--1072  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

       1034 TTTAATATTA

                           
       1044 GCAAATACCTTTTTT
          1 GCAAATACCTTTTTT

                           
       1059 GCAAATA-CTTTTTT
          1 GCAAATACCTTTTTT

       1073 TTTTTAAAAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    7  0.50
  15    7  0.50

ACGTcount: A:0.28, C:0.17, G:0.07, T:0.48


Consensus pattern (15 bp):   
GCAAATACCTTTTTT

Found at i:5012 original size:23 final size:22

Alignment explanation


    Indices: 4976--5024  Score: 71
    Period size: 23  Copynumber: 2.2  Consensus size: 22

       4966 ATCTAAAAAA

                          *       
       4976 AATTTTTGGTTTTTTCGTTTTT
          1 AATTTTTGGTTTTTGCGTTTTT

                   *               
       4998 AATTTTTTGTGTTTTGCGTTTTT
          1 AATTTTTGGT-TTTTGCGTTTTT

                
       5021 AATT
          1 AATT

       5025 AAAAAAAAAT


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  22    9  0.38
  23   15  0.62

ACGTcount: A:0.12, C:0.04, G:0.14, T:0.69


Consensus pattern (22 bp):   
AATTTTTGGTTTTTGCGTTTTT
Done.