Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023463.1 Corchorus olitorius cultivar O-4 contig23496, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5693
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:4413 original size:12 final size:13

Alignment explanation


    Indices: 4396--4425  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

       4386 TCACTCTTTG

                         
       4396 AAAAAAAAATAA-
          1 AAAAAAAAATAAT

                         
       4408 AAAAAAAAATAAT
          1 AAAAAAAAATAAT

                 
       4421 AAAAA
          1 AAAAA

       4426 GGTTAGTAAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   12  0.71
  13    5  0.29

ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10


Consensus pattern (13 bp):   
AAAAAAAAATAAT

Found at i:4416 original size:15 final size:15

Alignment explanation


    Indices: 4396--4425  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       4386 TCACTCTTTG

                           
       4396 AAAAAAAAATAAAAA
          1 AAAAAAAAATAAAAA

                  *        
       4411 AAAAAATAATAAAAA
          1 AAAAAAAAATAAAAA

       4426 GGTTAGTAAC


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10


Consensus pattern (15 bp):   
AAAAAAAAATAAAAA
Done.