genome.fa.s23464.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023464.1 Corchorus olitorius cultivar O-4 contig23497, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68664

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13566--13616	25	2.0	27	88	7	79	64	9	7	17	1.46
15792--15856	29	2.2	29	81	10	71	18	10	16	53	1.71
26463--26515	19	2.6	20	80	17	56	37	20	1	39	1.64
31650--31685	19	1.9	18	88	5	54	33	25	0	41	1.55
36766--36794	2	14.5	2	100	0	58	51	0	48	0	1.00
36899--36941	21	2.0	21	90	0	68	48	11	18	20	1.79
40008--40463	47	9.7	47	90	1	684	47	4	18	30	1.68
45512--45551	19	2.2	18	86	4	53	30	20	5	45	1.72
46173--46283	55	2.0	55	96	0	204	35	9	16	38	1.82
46353--46422	27	2.6	27	83	0	86	14	17	22	45	1.84
49743--49915	35	4.9	35	83	5	222	48	4	23	24	1.68
49743--49994	72	3.6	70	80	13	249	50	4	22	23	1.67
49922--50050	7	18.3	7	69	19	72	55	3	23	18	1.57
49906--49964	27	2.1	28	90	3	93	54	5	20	20	1.63
49883--50002	64	1.9	63	92	1	204	53	3	20	22	1.60
49743--50059	107	3.0	104	81	8	311	51	4	22	22	1.65
49946--50159	43	4.8	43	78	10	234	51	4	21	22	1.65
49743--50036	35	8.3	34	77	12	204	51	4	22	22	1.65
50025--50101	14	5.4	14	70	20	52	55	3	20	19	1.58
49946--50135	92	2.1	93	86	3	267	53	3	22	21	1.61
50047--50159	21	5.3	21	67	14	79	47	6	20	25	1.73
50199--50309	35	3.1	35	93	2	195	56	3	16	23	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50199--50308	36	3.1	36	96	1	195	57	3	15	23	1.54
50300--50387	26	3.3	26	74	16	81	63	3	18	14	1.44
50199--50330	71	1.9	71	87	3	194	57	4	16	21	1.57
50325--50394	26	2.6	27	84	6	97	60	2	20	17	1.49
50453--50518	29	2.4	28	87	5	89	63	4	18	13	1.46
51410--51475	26	2.7	25	84	13	84	46	9	7	36	1.64
60903--60931	10	3.0	10	95	5	51	20	37	10	31	1.86
64489--64562	31	2.4	31	93	0	121	32	29	17	20	1.95

Tables:   1

The End!