Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023471.1 Corchorus olitorius cultivar O-4 contig23504, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9419
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:6166 original size:21 final size:22

Alignment explanation


    Indices: 6131--6172  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       6121 TTAAATTTGC

                    *             
       6131 TGTCAGAATTATGTTTAATGAT
          1 TGTCAGAACTATGTTTAATGAT

                                 
       6153 TGTCAG-ACTATGTTTAATGA
          1 TGTCAGAACTATGTTTAATGA

       6173 CTGCTTTAAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   13  0.68
  22    6  0.32

ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43


Consensus pattern (22 bp):   
TGTCAGAACTATGTTTAATGAT
Done.