Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023473.1 Corchorus olitorius cultivar O-4 contig23506, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2181
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.31


Found at i:830 original size:21 final size:21

Alignment explanation


    Indices: 806--876  Score: 108
    Period size: 21  Copynumber: 3.4  Consensus size: 21

        796 CTTAGGCAAT

                         *       
        806 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                       *         
        827 TCCAATGAGCTGGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                                  
        848 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        869 TCCAATGA
          1 TCCAATGA

        877 TCTCCTAGCA


Statistics
Matches: 46,  Mismatches: 3, Indels: 2
        0.90            0.06        0.04

Matches are distributed among these distances:
  20    3  0.07
  21   43  0.93

ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC
Done.