Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023480.1 Corchorus olitorius cultivar O-4 contig23513, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2935
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31


Found at i:1071 original size:21 final size:21

Alignment explanation


    Indices: 1028--1074  Score: 60
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       1018 AGGGATCGAG

                         *       
       1028 CTGGGCGCTGAGCCTTGTCGC
          1 CTGGGCGCTGAGCATTGTCGC

                               *  
       1049 CTGGGCGCTGAGGCATT-TTGC
          1 CTGGGCGCTGA-GCATTGTCGC

                 
       1070 CTGGG
          1 CTGGG

       1075 TGCCCAGCGG


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  21   19  0.83
  22    4  0.17

ACGTcount: A:0.06, C:0.28, G:0.40, T:0.26


Consensus pattern (21 bp):   
CTGGGCGCTGAGCATTGTCGC
Done.